Categories

Visit BadVista.org Visit PlayOgg.org Visit DefectiveByDesign.org

CoaSim

'CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes.

The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.

Last updated 3 Aug, 2005


User level: Submit a level

User Rating:

Homepage

License(s) :

GPLv2

Rate it!

 

About

Leadership
Related Projects

CoaSim-gui

Versions

4.0.1

4.0.1 stable released 2005-08-03

  • Released: 3 Aug, 2005
  • Code Maturity: Stable
  • Licenses: GPLv2
  • Interfaces: Command Line

User Community and Support

User reference manual available in HTML format from http://www.birc.dk/Software/CoaSim/refman/index.html

General Resources
Support Resources

Development

Developer Resources
Bug Tracking Resources
 

Please send comments on these web pages to bug-directory@fsf.org, send other questions to info@fsf.org.

Copyright © 2000 - 2009 Free Software Foundation, Inc., 51 Franklin Street, 5th Floor, Boston, MA 02110-1301, USA

The copyright licensing notice below applies to this text. Any software described in this text has its own copyright notice and license, which can usually be found in the distribution itself.

Permission is granted to copy, distribute, and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, with no Front-Cover Texts, and with no Back-Cover Texts.