Amap-align
Amap-align
https://code.google.com/archive/p/amap-align/
Protein multiple alignment by sequence annealing
AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.
The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.
Licensing
License
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License
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Debian: Andreas Tille <tille@debian.org>
Verified on
14 November 2013
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License: gpl-2+
GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
On Debian systems, the complete text of the GNU General Public
License can be found in `/usr/share/common-licenses/GPL'.License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
14 November 2013
Notes
License: pd
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://bio.math.berkeley.edu/amap/download This download area as well as the homepage vanished | |
| Debian (Ref) | https://tracker.debian.org/pkg/amap-align |
Software prerequisites
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