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Bedtools

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Bedtools

http://code.google.com/p/bedtools/
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distribued in the filo package.


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Licensing

LicenseVerified byVerified onNotes
OtherDebian20 March 2013
License: under-the-MIT-license

under-the-MIT-license No further explanation about which MIT

license to follow was provided.
OtherDebian20 March 2013
OtherDebian20 March 2013
BSD 2ClauseDebian20 March 2013
GPLv2Debian20 March 2013



Leaders and contributors

Resources and communication

Audience Resource type URI
Download http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz


Software prerequisites



Entry



Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bedtools

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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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