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Bedtools

https://github.com/arq5x/bedtools2
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distribued in the filo package.


Download

Download version 2.26.0 (stable)
released on 6 July 2016

Categories




Licensing

LicenseVerified byVerified onNotes
OtherDebian20 March 2013
License: under-the-MIT-license

under-the-MIT-license No further explanation about which MIT

license to follow was provided.
OtherDebian20 March 2013
OtherDebian20 March 2013
BSD 2ClauseDebian20 March 2013
GPLv2Debian20 March 2013



Leaders and contributors

Resources and communication

Audience Resource type URI
Download https://github.com/arq5x/bedtools2/releases/latest


Software prerequisites

This entry (in part or in whole) was last reviewed on 7 October 2016.



Entry






























Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bedtools

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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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