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Bio3D

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Bio3d

http://mccammon.ucsd.edu/~bgrant/bio3d/
The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.


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Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterDebian20 March 2013



Leaders and contributors

Contact(s)Role
Barry Grant contact


Resources and communication

Audience Resource type URI
Download http://mccammon.ucsd.edu/~bgrant/bio3d/download/download.html


Software prerequisites



Entry



Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/r-other-bio3d

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