BioJava
Biojava
http://www.biojava.org
Java API to biological data and applications (default version)
BioJava is a free software? project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit.
BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list.
This is a wrapper package which should enable smooth upgrades to new versions.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian
Verified on
20 March 2013
Notes
License: LGPL-2.1+
LGPL-2.1+ BioJava is an open source project. The project is distributed under the GNU Lesser General Public Licence. We do not consider Java class loading to constitute the production of a derivative work. We do not consider consider sub-classing of Java classes or implementations of Java interfaces to constitute the production of a derivative work.
All .java source files should include the following comment which implies the author's agreement to the tearms of the license.
/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should
- be distributed with the code. If you do not have a copy, *
see: * * http://www.gnu.org/copyleft/lesser.html
- * Copyright for this code is held jointly by the individual
- authors. These should be listed in @author doc comments. *
- For more information on the BioJava project and its aims, *
or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * */
This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
Boston, MA 02110-1301 USALicense
Verified by
Debian
Verified on
20 March 2013
Notes
License: GPL-2+
GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
02110-1301 USALicense
Verified by
Debian
Verified on
20 March 2013
Notes
License: LGPL-2.1+
LGPL-2.1+ On Debian systems, the complete text of the GNU Lesser General Public License version 2.1 can be found in `/usr/share
/common-licenses/LGPL-2.1'.
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://www.biojava.org/download/source | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/biojava-live |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.