Free Software Foundation!

Join now

ClonalFrame

From Free Software Directory
 
Jump to: navigation,
[edit]

Clonalframe

http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, we recommend using Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.


Download

Categories




Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterDebian20 March 2013
PublicDomainDebian20 March 2013
License: PD

PD The packaging work is in the public domain unless stated

otherwise.



Leaders and contributors

Contact(s)Role
Xavier Didelot contact


Resources and communication

Audience Resource type URI
Download http://www.xavierdidelot.xtreemhost.com/clonalframe.htm


Software prerequisites



Entry



Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/clonalframe

[[Category:]]














Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


Personal tools
Namespaces

Variants
Actions
Navigation
Contribute