Clustalx
Clustalx
http://www.clustal.org/clustal2/
Multiple alignment of nucleic acid and protein sequences (graphical interface)
This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.
The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.
An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian
Verified on
20 March 2013
Notes
License: Unclear
Unclear The licence of the earlier works was never stated. Some works have been obsoleted by release of version 2.0 — the lesstif migration for instance — but authors are left in the list of copyright holders by courtesy. The work of Charles Plessy and
Steffen Möller can be treated as if it were public domain.License
Verified by
Debian
Verified on
20 March 2013
Notes
License: LGPL-3+
LGPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this program. If not, see
<http://www.gnu.org/licenses/>.
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://www.clustal.org/download/current/clustalx-2.1.tar.gz | |
| Debian (Ref) | https://tracker.debian.org/pkg/clustalx |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.