CoaSim
CoaSim
http://www.birc.dk/Software/CoaSim/
'CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.
Documentation
User reference manual available in HTML format from http://www.birc.dk/Software/CoaSim/refman/index.html
Related Projects
Download
version 4.0.1
(stable)
released on 3 August 2005
Categories
Licensing
| License | Verified by | Verified on | Notes |
|---|---|---|---|
| GPLv2 | Janet Casey | 2 February 2005 |
Leaders and contributors
| Contact(s) | Role |
|---|---|
 Thomas Mailund | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:mailund@birc.dk |
Software prerequisites
This entry (in part or in whole) was last reviewed on 3 August 2005.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software described in this text has its own copyright notice and license, which can usually be found in the distribution itself.