Libbio-samtools-perl
Libbio-samtools-perl
https://metacpan.org/release/Bio-SamTools/
Perl interface to SamTools library for DNA sequencing
Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.
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License
Verified by
Verified on
Notes
License
Verified by
Debian: Charles Plessy <plessy@debian.org>
Verified on
29 September 2013
Notes
License: gpl-1+ or artistic-2.0
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) | https://tracker.debian.org/pkg/libbio-samtools-perl | |
| Download | http://cpan.metacpan.org/authors/id/L/LD/LDS/Bio-SamTools-1.39.tar.gz |
Software prerequisites
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