PerlPrimer
PerlPrimer
http://perlprimer.sourceforge.net
'PerlPrimer' designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR), and sequencing by automating and simplifying the process of primer design. Current features include calculation of possible primer-dimers, retrieval of genomic or CDNA sequences from Ensembl, the ability to BLAST search primers using the NCBI server, ORF, and CpG island detection algorithms, the ability to add cloning sequences to primers, automatically adjusted to be in-frame, and QPCR primer design without manual intron-exon boundary entry.
Documentation
User tutorial available in HTML format from http://perlprimer.sourceforge.net/tutorial.html
Licensing
| License | Verified by | Verified on | Notes |
|---|---|---|---|
| GPLv2orlater | Janet Casey | 21 June 2004 |
Leaders and contributors
| Contact(s) | Role |
|---|---|
 Owen Marshall | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:owenjm@users.sourceforge.net |
Software prerequisites
| Kind | Description |
|---|---|
| Required to use | libwww-perl 5.76 or later |
| Required to use | Perl/Tk |
| Required to use | Perl |
This entry (in part or in whole) was last reviewed on 7 January 2008.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
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