Bedtools

Free Software Foundation!

Join now

Browse wiki

Jump to: navigation,
Bedtools
Computer languages C++  +
Full description The BEDTools utilities allow one to addresThe BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together. The groupBy utility is distribued in the filo package.utility is distribued in the filo package.
Homepage URL https://github.com/arq5x/bedtools2  +
Import date 20 March 2013  +
Import source Debian import  +
Import source link http://packages.debian.org/sid/bedtools  +
Is GNU false  +
Last review by Tim Howes +
Last review date 7 October 2016  +
License GPLv2 + , Other + , BSD 2Clause +
License copyright © © 2009,2010,2011 Aaron Quinlan © © 2010 - Assaf Gordon, CSHL , © © 2009, 2010, 2011 - Aaron Quinlan , © © 2010 Erik Garrison <erik.garrison@bc.edu> , © © 2009-2010 Derek Barnett, Erik Garrison, Gabor Marth, Michael Stromberg , © © 2001 Deepak Bandyopadhyay, Lutz Kettner , © © 2007-2010 by the Sphinx team
License note License: under-the-MIT-license under-the-MIT-license No further explanation about which MIT license to follow was provided.  +
License verified by Debian  +
License verified date 20 March 2013  +
Name Bedtools  +
Resource URL https://github.com/arq5x/bedtools2/releases/latest  +
Resource kind Download  +
Revisionid 36,803  +
Revisiontimestamp 7 October 2016 12:56:35  +
Revisionuser User:Timhowes +
Runs-on GNU/Linux  +
Short description suite of utilities for comparing genomic features  +
Submitted by Debian import +
Submitted date 20 March 2013  +
Version date 6 July 2016  +
Version download https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz  +
Version identifier 2.26.0  +
Version status stable  +
Has queryThis property is a special property in this wiki. Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools +
Has improper value forThis property is a special property in this wiki. License note  +
Categories Entry  +
Modification dateThis property is a special property in this wiki. 4 December 2016 15:39:10  +
Page has default formThis property is a special property in this wiki. Entry  +
Has subobjectThis property is a special property in this wiki. Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools +
hide properties that link here 
Bedtools + Has featured
Bedtools + , Bedtools + , Bedtools + , Bedtools + , Bedtools + License of
Bedtools + Resource of
 

 

Enter the name of the page to start browsing from.



Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


Personal tools
Namespaces

Variants
Views
Actions
Interaction
Navigation
Tools
Print