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Bowtie2
Full description is an ultrafast and memory-efficient tool is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modesped, local, and paired-end alignment modes
Homepage URL http://bowtie-bio.sourceforge.net/bowtie2  +
Import date 20 March 2013  +
Import source Debian import  +
Import source link http://packages.debian.org/sid/bowtie2  +
Is GNU false  +
License GPLv3orlater + , Zlib + , Other +
License copyright © © 2009-2011 Ben Langmead, C. Trapnell, M. Pop, Steven L. Salzberg , © © 2010-2012, Marcus Geelnard , © © 1999, N. Jesper Larsson , © © 2012 Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
License verified by Debian  +
License verified date 20 March 2013  +
Name Bowtie2  +
Real name Ben Langmead  +
Resource URL http://sourceforge.net/projects/bowtie2-bio/files/bowtie2/  +
Resource kind Download  +
Revisionid 17,489  +
Revisiontimestamp 27 March 2013 17:02:17  +
Revisionuser User:WikiSysop +
Short description ultrafast memory-efficient short read aligner  +
Submitted by Debian import +
Submitted date 20 March 2013  +
Has queryThis property is a special property in this wiki. Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 +
Has improper value forThis property is a special property in this wiki. License note  + , Role  +
Modification dateThis property is a special property in this wiki. 4 January 2014 04:10:56  +
Page has default formThis property is a special property in this wiki. Entry  +
Has subobjectThis property is a special property in this wiki. Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 + , Bowtie2 +
EmailThis property is a special property in this wiki. langmea@cs.jhu.edu  +
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Bowtie2 + , Bowtie2 + , Bowtie2 + License of
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