Browse wiki
This entry published by the Free Software Foundation.
| CoaSim |
| Computer languages | C++ + |
|---|---|
| Documentation note | User reference manual available in HTML format from http://www.birc.dk/Software/CoaSim/refman/index.html |
| Full description | 'CoaSim' is a tool for simulating the coal … 'CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies. control data sets for association studies. |
| Homepage URL | http://www.birc.dk/Software/CoaSim/ + |
| Interface | command-line + |
| Is GNU | false + |
| Keywords | simukation + , coalescent + , recombination + , gene conversion + , SNP + , micro-satellite + , haplotypes + , genotypes + |
| Last review by | Janet Casey + |
| Last review date | 3 August 2005 + |
| License | GPLv2 + |
| License verified by | Janet Casey + |
| License verified date | 2 February 2005 + |
| Name | CoaSim + |
| Real name | Thomas Mailund + |
| Related projects | CoaSim-gui + |
| Resource URL | mailto:mailund@birc.dk + |
| Resource audience | Bug Tracking + , Developer + , Support + |
| Resource kind | E-mail + |
| Revisionid | 5,744 + |
| Revisiontimestamp | 12 April 2011 14:51:41 + |
| Revisionuser | WikiSysop + |
| Role | Maintainer + |
| Science | biology + , scientific-visualization + |
| Short description | Coalescence process simulator + |
| Submitted by | Database conversion + |
| Submitted date | 1 April 2011 + |
| Use | science + |
| User level | none + |
| Version comment | 4.0.1 stable released 2005-08-03 |
| Version date | 3 August 2005 + |
| Version identifier | 4.0.1 + |
| Version status | stable + |
| Modification dateThis property is a special property in this wiki. | 25 May 2012 01:55:32 + |
| Page has default formThis property is a special property in this wiki. | Entry + |
| EmailThis property is a special property in this wiki. | thomas@mailund.dk + |
| hide properties that link here |
| CoaSim#3 + | License of |
|---|---|
| CoaSim#1 + | Person of |
| CoaSim-gui + | Related projects |
| CoaSim#2 + | Resource of |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software described in this text has its own copyright notice and license, which can usually be found in the distribution itself.