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This entry published by the Free Software Foundation.
| Phylographer |
| Computer languages | Tcl/tk + |
|---|---|
| Full description | PhyloGrapher helps you visualize and study … PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness. is indicated by color and line thickness. |
| Homepage URL | http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html + |
| Interface | x-window-system + |
| Is GNU | false + |
| Keywords | science + , biology + , protein + , phylographer + , genetics + , gene + , evolution + |
| Last review by | Janet Casey + |
| Last review date | 19 July 2005 + |
| License | GPLv2orlater + |
| License verified by | Janet Casey + |
| License verified date | 7 November 2002 + |
| Name | Phylographer + |
| Prerequisite description | fasta (ftp://ftp.virginia.edu/pub/fasta) + |
| Prerequisite kind | Weak prerequisite + |
| Real name | Alexander Kozik + |
| Related projects | GAUL + , Open BEAGLE + , Split-Dist + , FastDNAml + |
| Resource URL | mailto:akozik@atgc.org + |
| Resource audience | Bug Tracking + , Developer + , Support + |
| Resource kind | E-mail + |
| Revisionid | 4,038 + |
| Revisiontimestamp | 12 April 2011 14:02:03 + |
| Revisionuser | WikiSysop + |
| Role | Maintainer + |
| Science | biology + |
| Short description | Visualizes evolutionary relationships + |
| Submitted by | Database conversion + |
| Submitted date | 1 April 2011 + |
| Use | science + |
| User level | none + |
| Version comment | 2003-04-03 stable released 2003-04-03 |
| Version date | 3 April 2003 + |
| Version download | http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz + |
| Version identifier | 2003-04-03 + |
| Version status | stable + |
| Modification dateThis property is a special property in this wiki. | 25 May 2012 00:38:38 + |
| Page has default formThis property is a special property in this wiki. | Entry + |
| EmailThis property is a special property in this wiki. | akozik@atgc.org + |
| hide properties that link here |
| Phylographer#3 + | License of |
|---|---|
| Phylographer#1 + | Person of |
| FastDNAml + , GAUL + , Open BEAGLE + , Split-Dist + | Related projects |
| Phylographer#2 + | Resource of |
| Phylographer#4 + | Software prerequisite of |
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