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Phylographer
Computer languages Tcl/tk  +
Full description PhyloGrapher helps you visualize and studyPhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness. is indicated by color and line thickness.
Homepage URL http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html  +
Interface x-window-system  +
Is GNU false  +
Keywords science  + , biology  + , protein  + , phylographer  + , genetics  + , gene  + , evolution  +
Last review by Janet Casey +
Last review date 19 July 2005  +
License GPLv2orlater +
License verified by Janet Casey  +
License verified date 7 November 2002  +
Name Phylographer  +
Prerequisite description fasta (ftp://ftp.virginia.edu/pub/fasta)  +
Prerequisite kind Weak prerequisite  +
Real name Alexander Kozik  +
Related projects GAUL + , Open BEAGLE + , Split-Dist + , FastDNAml +
Resource URL mailto:akozik@atgc.org  +
Resource audience Bug Tracking  + , Developer  + , Support  +
Resource kind E-mail  +
Revisionid 4,038  +
Revisiontimestamp 12 April 2011 10:02:03  +
Revisionuser User:WikiSysop +
Role Maintainer  +
Science biology  +
Short description Visualizes evolutionary relationships  +
Submitted by Database conversion +
Submitted date 1 April 2011  +
Use science  +
User level none  +
Version comment 2003-04-03 stable released 2003-04-03
Version date 3 April 2003  +
Version download http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz  +
Version identifier 2003-04-03  +
Version status stable  +
Has queryThis property is a special property in this wiki. Phylographer + , Phylographer + , Phylographer + , Phylographer + , Phylographer + , Phylographer + , Phylographer + , Phylographer + , Phylographer +
Modification dateThis property is a special property in this wiki. 1 August 2014 22:59:12  +
Page has default formThis property is a special property in this wiki. Entry  +
Has subobjectThis property is a special property in this wiki. Phylographer + , Phylographer + , Phylographer + , Phylographer +
EmailThis property is a special property in this wiki. akozik@atgc.org  +
hide properties that link here 
Phylographer + License of
Phylographer + Person of
FastDNAml + , GAUL + , Open BEAGLE + , Split-Dist + Related projects
Phylographer + Resource of
Phylographer + Software prerequisite of
 

 

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