Libnhgri-blastall-perl
Libnhgri-blastall-perl
ftp://ftp.nhgri.nih.gov/pub/software/blastall/
Perl extension for running and parsing NCBI's BLAST 2.x
NHGRI::Blastall will enable usage of BLAST out of a Perl script, if BLAST2 or WU-BLAST are installed locally. Main features are:
- run BLAST (also via network, which requires blastcl3) * BLAST
single sequences against each other or against a given library * format databases * mask out repetitive DNA * read, parse and filter existing BLAST reports
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Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Laszlo Kajan <lkajan@rostlab.org>
Verified on
10 July 2012
Notes
License: public-domain
public-domain PUBLIC DOMAIN NOTICE This software/database is ``United States Government Work under the terms of the United States Copyright Act. It was written as part of the authors' official duties for the United States Government and thus cannot be copyrighted. This software/database is freely available to the public for use without a copyright notice. Restrictions cannot be placed on its present or future use. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the National Human Genome Research Institute (NHGRI) and the U.S. Government does not and cannot warrant the performance or results that may be obtained by using this software or data. NHGRI and the U.S. Government disclaims all warranties as to performance, merchantability or fitness for any particular purpose. In any work or product derived from this material, proper attribution of the authors as the source of the software or data should be made, using
http://genome.nhgri.nih.gov/webblast as the citation.
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Joseph Ryan | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | ftp://ftp.nhgri.nih.gov/pub/software/blastall/NHGRI-Blastall-0.66.tar.gz | |
| Debian (Ref) | https://tracker.debian.org/pkg/libnhgri-blastall-perl |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
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