Difference between revisions of "AmpliconNoise"
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|Name=Ampliconnoise | |Name=Ampliconnoise | ||
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|Short description=Programs for the removal of noise from 454 sequenced PCR amplicons | |Short description=Programs for the removal of noise from 454 sequenced PCR amplicons | ||
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|Full description=AmpliconNoise is a package of applications to clean up high- | |Full description=AmpliconNoise is a package of applications to clean up high- | ||
throughput sequence data. It consists of three main parts: | throughput sequence data. It consists of three main parts: | ||
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Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC | Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC | ||
Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38 | Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38 | ||
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|Homepage URL=http://code.google.com/p/ampliconnoise/ | |Homepage URL=http://code.google.com/p/ampliconnoise/ | ||
| + | |Accepts cryptocurrency donations=No | ||
| + | |Last review by=Bendikker | ||
| + | |Last review date=2018/03/07 | ||
| + | |Submitted date=2013-03-20 | ||
|Is GNU=No | |Is GNU=No | ||
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}} | }} | ||
{{Project license | {{Project license | ||
| + | |License=Other | ||
| + | |License copyright=© © 2009-2011 Christopher Quince <quince@civil.gla.ac.uk> | ||
| + | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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|License note=License: GNU Lesser GPL v3 | |License note=License: GNU Lesser GPL v3 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
| + | |License=GPLv3 | ||
| + | |License copyright=© © Tim Booth <tbooth@ceh.ac.uk> | ||
| + | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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|License note=License: GPL-3 | |License note=License: GPL-3 | ||
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{{Person | {{Person | ||
|Real name=Tim Booth | |Real name=Tim Booth | ||
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|Role=contact | |Role=contact | ||
|Email=tbooth@ceh.ac.uk | |Email=tbooth@ceh.ac.uk | ||
}} | }} | ||
{{Resource | {{Resource | ||
| + | |Resource audience=Debian (Ref) (R) | ||
| + | |Resource URL=https://tracker.debian.org/pkg/ampliconnoise | ||
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| + | {{Resource | ||
| + | |Resource kind=Download | ||
|Resource URL=http://code.google.com/p/ampliconnoise/ | |Resource URL=http://code.google.com/p/ampliconnoise/ | ||
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| + | {{Software category}} | ||
| + | {{Featured}} | ||
| + | {{Import | ||
| + | |Date=2013-03-20 | ||
| + | |Source=Debian import | ||
| + | |Source link=http://packages.debian.org/sid/ampliconnoise | ||
}} | }} | ||
Latest revision as of 05:19, 7 March 2018
Ampliconnoise
http://code.google.com/p/ampliconnoise/
Programs for the removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high- throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian
Verified on
20 March 2013
Notes
License: GNU Lesser GPL v3
GNU Lesser GPL v3 This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this library ('COPYING'); if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
On Debian systems, the full text of the GNU LESSER GENERAL PUBLIC LICENSE can be found in the file `/usr/share/common-
licenses/LGPL-3'.License
Verified by
Debian
Verified on
20 March 2013
Notes
License: GPL-3
GPL-3 The packaging is licensed under GPL version3 see
`/usr/share/common-licenses/GPL-3'.
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Tim Booth | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://code.google.com/p/ampliconnoise/ | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/ampliconnoise |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.