Difference between revisions of "Bamtools"
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{{Entry | {{Entry | ||
|Name=bamtools | |Name=bamtools | ||
| − | |Short description=tools for handling BAM files. | + | |Short description=tools for handling genome alignment (BAM) files. |
| − | |Full description=BamTools provides both a programmer's API and an end-user's toolkit for handling BAM | + | |Full description=BamTools provides both a programmer's API and an end-user's toolkit for handling genome alignment files in the BAM and SAM format. |
A BAM file (.bam) is the binary version of a SAM file. A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data. | A BAM file (.bam) is the binary version of a SAM file. A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data. | ||
|Homepage URL=https://github.com/pezmaster31/bamtools/wiki | |Homepage URL=https://github.com/pezmaster31/bamtools/wiki | ||
| + | |VCS checkout command=git clone https://github.com/pezmaster31/bamtools | ||
|Version identifier=2.3.0 | |Version identifier=2.3.0 | ||
|Version date=2013/07/24 | |Version date=2013/07/24 | ||
|Version status=stable | |Version status=stable | ||
|Version download=https://github.com/pezmaster31/bamtools | |Version download=https://github.com/pezmaster31/bamtools | ||
| − | |Submitted by= | + | |Submitted by=bethlynn |
| − | |Submitted date=2014/06/ | + | |Submitted date=2014/06/20 |
|Status= | |Status= | ||
|Is GNU=No | |Is GNU=No | ||
}} | }} | ||
{{Project license | {{Project license | ||
| − | |License note= | + | |License=Expat |
| + | |License note=Actual license language: | ||
https://github.com/pezmaster31/bamtools/blob/master/LICENSE | https://github.com/pezmaster31/bamtools/blob/master/LICENSE | ||
}} | }} | ||
| + | {{Person | ||
| + | |Real name=Derek Barnett | ||
| + | |Role=primary contact | ||
| + | |Email=derekwbarnett@gmail.com | ||
| + | |Resource URL= | ||
| + | }} | ||
| + | {{Person | ||
| + | |Resource URL= | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource audience=bamtools users | ||
| + | |Resource kind=Mailing List | ||
| + | |Resource URL=https://github.com/pezmaster31/bamtools/wiki/Mailing-lists | ||
| + | }} | ||
| + | {{Resource}} | ||
{{Software category | {{Software category | ||
|Biology=genetics | |Biology=genetics | ||
Revision as of 15:56, 20 June 2014
bamtools
https://github.com/pezmaster31/bamtools/wiki
tools for handling genome alignment (BAM) files.
BamTools provides both a programmer's API and an end-user's toolkit for handling genome alignment files in the BAM and SAM format. A BAM file (.bam) is the binary version of a SAM file. A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Jgay
Verified on
20 June 2014
Notes
Actual license language: https://github.com/pezmaster31/bamtools/blob/master/LICENSE
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Derek Barnett | primary contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) | https://tracker.debian.org/pkg/bamtools | |
| bamtools users | Mailing List | https://github.com/pezmaster31/bamtools/wiki/Mailing-lists |
Software prerequisites
| Kind | Description |
|---|---|
| Required to build | cmake |
| {{{Prerequisite description}}} |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.