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Category/Biology

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Antidote
IEEE 11073-20601 stack

Bamtools
tools for handling genome alignment (BAM) files.

Bioinformatics Template Library
Library for life sciences programming

Biskit
a python library for structural bioinformatics research.

Blossoc
A block-association mapping tool.

Bmrblib
The Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) library

CAGE
a generic and fairly complete cellular automata simulation engine.

CT Sim
Computed tomography simulator

CoaSim
Coalescence process simulator

CoaSim-gui
GUI for the CoaSim coalescence process simulator

CvEyeTracker
Tools for eye tracking

DataStatix
A free software to manage data and statistics with MySql

Datamash Heckert gnu.small.png
numeric,textual and statistical operations on input textual data files

E-CELL Simulation Environment
Software for cellular and biochemical modeling and simulation

FastDNAml
Phylogenetic analysis software

GAUL
Library for programming applications using genetic algorithms

GENtle
Bioinformatics software for everyday molecular biology tasks

HASAS
HydroAcoustic Signal Analysis System

Health Heckert gnu.small.png
Hospital and Health Information System

ImageJ
Image Processing and Analysis in Java

KNIME
KNIME is a user-friendly graphical workbench for the entire analysis process

MetaPath
Metabolic pathway visualisation and analysis

Minfx
The minfx optimisation library

NeuroScope
an advanced viewer for electrophysiological and behavioral data.

Open BEAGLE
Evolutionary computation framework

Orthanc
Lightweight, RESTful DICOM server for healthcare and medical research

PerlPrimer
Designs primers for standard, bisulphite, and real-time PCR, and sequencing

Phylographer
Visualizes evolutionary relationships

Py-ACQUA 2
Allows you to moniter your aquarium

Pycomedi
An object-oriented Python interface for the Comedi drivers

QDist
Computes the quartet distance between unrooted evolutionary trees

RIGEL
Representation-Independant Genetic Engine Library

Relax
Molecular dynamics by NMR data analysis

SigmaPi Neurosimulator
A simulator for recurrent neural networks.

SimThyr
Simulation program for thyroid homeostasis

Simple World
a program tries to reproduce the basic elements that define a simple world.

Sispread
simulates the dynamics of an hypothetical infectious disease within a contact network of connected people.

Slither
an application designed to track the movement of C. elegans worms in a laboratory environment.

Split-Dist
Calculates the number of splits (edges) that differs for two trees

Xmedcon
Medical image conversion utility and library

Yanuca
a web tool to calculate plans for artificial nutrition (enteral+parenteral) in intensive care patients.

Z--PeerLibrary
Facilitating the global conversation on academic literature





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