Hmmer
Hmmer
http://hmmer.janelia.org/
profile hidden Markov models for protein sequence analysis
HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.
Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Laszlo Kajan <lkajan@debian.org>
Verified on
13 September 2014
Notes
License: gpl-2+
Leaders and contributors
Contact(s) | Role |
---|---|
Sean Eddy | contact |
Resources and communication
Audience | Resource type | URI |
---|---|---|
Download | ftp://selab.janelia.org/pub/software/hmmer/ | |
Debian (Ref) (R) | https://tracker.debian.org/pkg/hmmer2 | |
Debian (Ref) | https://tracker.debian.org/pkg/hmmer |
Software prerequisites
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