Difference between revisions of "Melting"
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|Name=Melting | |Name=Melting | ||
|Short description=Nearest-neighbor compilation of nucleic acid hybridation | |Short description=Nearest-neighbor compilation of nucleic acid hybridation | ||
| − | |Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodymanic parameters can easily be changed, for instance following an experimental breakthrough. | + | |Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodymanic parameters can easily be changed, for instance following an experimental breakthrough. |
| + | |Homepage URL=http://gnu.org/software/melting | ||
| + | |Is GNU=Yes | ||
|User level=none | |User level=none | ||
| − | + | |Computer languages=Java | |
| − | + | |Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html | |
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| − | |Computer languages= | + | |
| − | |Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/ | + | |
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|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | |Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | ||
| − | | | + | |Version identifier=5.0.3 |
| − | |Last review by= | + | |Version date=2011/11/02 |
| − | |Last review date= | + | |Version status=stable |
| + | |Version download=http://www.ebi.ac.uk/compneur-srv/melting/MELTING5.0.3.tar.gz | ||
| + | |Last review by=Andrew Engelbrecht | ||
| + | |Last review date=2012/06/22 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
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|License verified date=2001-01-31 | |License verified date=2001-01-31 | ||
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| + | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License verified by=Andrew Engelbrecht | ||
| + | |License verified date=2001-01-31 | ||
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{{Person | {{Person | ||
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|Real name=Nicolas Le Novere | |Real name=Nicolas Le Novere | ||
| + | |Role=Maintainer | ||
|Email=lenov@pasteur.fr | |Email=lenov@pasteur.fr | ||
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{{Person | {{Person | ||
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|Real name=Catherine Letondal | |Real name=Catherine Letondal | ||
| + | |Role=Contributor | ||
|Email=letondal@pasteur.fr | |Email=letondal@pasteur.fr | ||
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{{Person | {{Person | ||
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|Real name=Nicolas Joly | |Real name=Nicolas Joly | ||
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|Email=njoly@pasteur.fr | |Email=njoly@pasteur.fr | ||
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{{Person | {{Person | ||
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|Real name=Nirav Merchant | |Real name=Nirav Merchant | ||
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|Email=nirav@biosci.arizona.edu | |Email=nirav@biosci.arizona.edu | ||
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{{Software category | {{Software category | ||
| − | |Interface=command-line,x-window-system | + | |Interface=command-line, web, x-window-system |
|Science=chemistry | |Science=chemistry | ||
|Use=science | |Use=science | ||
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Revision as of 16:02, 22 June 2012
[edit]
Melting
http://gnu.org/software/melting
Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.
Documentation
User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html
This is a GNU package:melting
Download
Download 
version 5.0.3
(stable)
released on 2 November 2011
Categories
Licensing
| License | Verified by | Verified on | Notes |
|---|---|---|---|
| GPLv2orlater | Andrew Engelbrecht | 31 January 2001 |
Leaders and contributors
| Contact(s) | Role |
|---|---|
 Nicolas Le Novere | Maintainer |
|
Catherine Letondal | Contributor |
|
Nicolas Joly | Contributor |
|
Nirav Merchant | Contributor |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:melting@listes.pasteur.fr |
Software prerequisites
This entry (in part or in whole) was last reviewed on 22 June 2012.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software described in this text has its own copyright notice and license, which can usually be found in the distribution itself.