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(Created page with "{{Entry |Name=Melting |Short description=Nearest-neighbor compilation of nucleic acid hybridation |Full description=Melting computes, for a nucleic acid duplex, the enthalpy and ...")
 
(updated version info. it's now written in java.)
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|Name=Melting
 
|Name=Melting
 
|Short description=Nearest-neighbor compilation of nucleic acid hybridation
 
|Short description=Nearest-neighbor compilation of nucleic acid hybridation
|Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodymanic parameters can easily be changed, for instance following an experimental breakthrough. The program is coded in ISO C and can be compiled on any operating system. Some Perl scripts are provided to show how melting can be used as a block to construct more ambitious programs.
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|Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodymanic parameters can easily be changed, for instance following an experimental breakthrough.
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|Homepage URL=http://gnu.org/software/melting
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|Is GNU=Yes
 
|User level=none
 
|User level=none
|Status=Live
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|Computer languages=Java
|Component programs=
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|Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html
|Homepage URL=http://www.ebi.ac.uk/~lenov/meltinghome.html
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|VCS checkout command=
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|Computer languages=C,Perl
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|Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/~lenov/SOFTWARES/melting/melting.html
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|Paid support=
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|IRC help=
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|IRC general=
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|IRC development=
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|Related projects=
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|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors
 
|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors
|Is GNU=y
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|Version identifier=5.0.3
|Last review by=Janet Casey
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|Version date=2011/11/02
|Last review date=2005-03-02
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|Version status=stable
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|Version download=http://www.ebi.ac.uk/compneur-srv/melting/MELTING5.0.3.tar.gz
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|Last review by=Andrew Engelbrecht
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|Last review date=2012/06/22
 
|Submitted by=Database conversion
 
|Submitted by=Database conversion
 
|Submitted date=2011-04-01
 
|Submitted date=2011-04-01
|Version identifier=4.2
 
|Version date=2002-02-21
 
|Version status=stable
 
|Version download=http://www.ebi.ac.uk/~lenov/SOFTWARES/melting4_2g.tar.gz
 
 
|License verified date=2001-01-31
 
|License verified date=2001-01-31
|Version comment=4.2 stable released 2002-02-21
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}}
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{{Project license
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|License=GPLv2orlater
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|License verified by=Andrew Engelbrecht
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|License verified date=2001-01-31
 
}}
 
}}
 
{{Person
 
{{Person
|Role=Maintainer
 
 
|Real name=Nicolas Le Novere
 
|Real name=Nicolas Le Novere
 +
|Role=Maintainer
 
|Email=lenov@pasteur.fr
 
|Email=lenov@pasteur.fr
|Resource URL=
 
 
}}
 
}}
 
{{Person
 
{{Person
|Role=Contributor
 
 
|Real name=Catherine Letondal
 
|Real name=Catherine Letondal
 +
|Role=Contributor
 
|Email=letondal@pasteur.fr
 
|Email=letondal@pasteur.fr
|Resource URL=
 
 
}}
 
}}
 
{{Person
 
{{Person
|Role=Contributor
 
 
|Real name=Nicolas Joly
 
|Real name=Nicolas Joly
 +
|Role=Contributor
 
|Email=njoly@pasteur.fr
 
|Email=njoly@pasteur.fr
|Resource URL=
 
 
}}
 
}}
 
{{Person
 
{{Person
|Role=Contributor
 
 
|Real name=Nirav Merchant
 
|Real name=Nirav Merchant
 +
|Role=Contributor
 
|Email=nirav@biosci.arizona.edu
 
|Email=nirav@biosci.arizona.edu
|Resource URL=
 
 
}}
 
}}
 
{{Resource
 
{{Resource
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}}
 
}}
 
{{Software category
 
{{Software category
|Interface=command-line,x-window-system,web
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|Interface=command-line, web, x-window-system
 
|Science=chemistry
 
|Science=chemistry
 
|Use=science
 
|Use=science
 
}}
 
}}
{{Project license
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{{Featured}}
|License=GPLv2orlater
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|License verified by=Janet Casey
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|License verified date=2001-01-31
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}}
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{{Software prerequisite
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|Prerequisite kind=Required to use
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|Prerequisite description=Perl
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}}
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{{Software prerequisite
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|Prerequisite kind=Required to use
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|Prerequisite description=Perl/tk
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}}
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{{Software prerequisite
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|Prerequisite kind=Weak prerequisite
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|Prerequisite description=Perl
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}}
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{{Software prerequisite
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|Prerequisite kind=Weak prerequisite
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|Prerequisite description=Perl/tk
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}}
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Revision as of 15:02, 22 June 2012

[edit]

Melting

http://gnu.org/software/melting
Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.

Documentation

User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html

Heckert gnu.small.png This is a GNU package:melting

Download

Download version 5.0.3 (stable)
released on 2 November 2011

Categories




Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterAndrew Engelbrecht31 January 2001



Leaders and contributors

Contact(s)Role
Nicolas Le Novere Maintainer
Catherine Letondal Contributor
Nicolas Joly Contributor
Nirav Merchant Contributor


Resources and communication

Audience Resource type URI
Bug Tracking,Developer,Support E-mail mailto:melting@listes.pasteur.fr


Software prerequisites

This entry (in part or in whole) was last reviewed on 22 June 2012.



Entry



























Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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