Difference between revisions of "Melting"
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{{Entry | {{Entry | ||
| − | |Name= | + | |Name=GNU MELTING |
|Short description=Nearest-neighbor compilation of nucleic acid hybridation | |Short description=Nearest-neighbor compilation of nucleic acid hybridation | ||
| − | |Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough. | + | |Full description='''Melting''' computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough. |
|Homepage URL=http://gnu.org/software/melting | |Homepage URL=http://gnu.org/software/melting | ||
| − | |User level= | + | |User level=advanced |
| + | |VCS checkout command=svn co https://svn.code.sf.net/p/melting/code/trunk melting-code | ||
|Computer languages=Java | |Computer languages=Java | ||
|Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html | |Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html | ||
|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | |Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | ||
| − | |Version identifier=5.0 | + | |Version identifier=5.2.0 |
| − | |Version date= | + | |Version date=2014/08/08 |
|Version status=stable | |Version status=stable | ||
| − | |Version download= | + | |Version download=https://sourceforge.net/projects/melting/files/meltingJava/melting5/ |
|Last review by=Andrew Engelbrecht | |Last review by=Andrew Engelbrecht | ||
|Last review date=2012/06/22 | |Last review date=2012/06/22 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| + | |Status= | ||
|Is GNU=Yes | |Is GNU=Yes | ||
|GNU package identifier=melting | |GNU package identifier=melting | ||
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{{Project license | {{Project license | ||
|License=GPLv2orlater | |License=GPLv2orlater | ||
| − | |License verified by= | + | |License verified by=Genium |
| − | |License verified date= | + | |License verified date=2017/01/29 |
| + | |License note=https://sourceforge.net/p/melting/code/HEAD/tree/trunk/melting-java/COPYING.txt | ||
}} | }} | ||
{{Person | {{Person | ||
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|Role=Maintainer | |Role=Maintainer | ||
|Email=lenov@pasteur.fr | |Email=lenov@pasteur.fr | ||
| + | |Resource URL= | ||
}} | }} | ||
{{Person | {{Person | ||
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|Role=Contributor | |Role=Contributor | ||
|Email=letondal@pasteur.fr | |Email=letondal@pasteur.fr | ||
| + | |Resource URL= | ||
}} | }} | ||
{{Person | {{Person | ||
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|Role=Contributor | |Role=Contributor | ||
|Email=njoly@pasteur.fr | |Email=njoly@pasteur.fr | ||
| + | |Resource URL= | ||
}} | }} | ||
{{Person | {{Person | ||
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|Role=Contributor | |Role=Contributor | ||
|Email=nirav@biosci.arizona.edu | |Email=nirav@biosci.arizona.edu | ||
| + | |Resource URL= | ||
}} | }} | ||
{{Resource | {{Resource | ||
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|Resource kind=E-mail | |Resource kind=E-mail | ||
|Resource URL=mailto:melting@listes.pasteur.fr | |Resource URL=mailto:melting@listes.pasteur.fr | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource audience=Developer | ||
| + | |Resource kind=Homepage | ||
| + | |Resource URL=https://sourceforge.net/projects/melting/ | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource audience=Developer | ||
| + | |Resource kind=Download | ||
| + | |Resource URL=https://sourceforge.net/projects/melting/files/ | ||
}} | }} | ||
{{Software category | {{Software category | ||
|Interface=command-line, web, x-window-system | |Interface=command-line, web, x-window-system | ||
| + | |Programming-language=java | ||
|Science=chemistry | |Science=chemistry | ||
|Use=science | |Use=science | ||
}} | }} | ||
{{Featured}} | {{Featured}} | ||
Revision as of 06:34, 29 January 2017
MELTING
https://www.gnu.org/software/melting/
Nearest-neighbor compilation of nucleic acid hybridation.
Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.
This is a GNU package:melting
Download
https://sourceforge.net/projects/melting/files/meltingJava/melting5/MELTING5.2.0.tar.gz/download/
Categories
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Marine Dumousseau | Maintainer |
Resources and communication
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.