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{{Entry
 
{{Entry
|Name=Melting
+
|Name=GNU MELTING
 
|Short description=Nearest-neighbor compilation of nucleic acid hybridation
 
|Short description=Nearest-neighbor compilation of nucleic acid hybridation
|Full description=Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.
+
|Full description='''Melting''' computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.
|Homepage URL=http://gnu.org/software/melting
+
|Homepage URL=https://www.ebi.ac.uk/biomodels/tools/melting/
|Is GNU=Yes
+
|User level=advanced
|User level=none
+
|VCS checkout command=svn co https://svn.code.sf.net/p/melting/code/trunk melting-code
 
|Computer languages=Java
 
|Computer languages=Java
 
|Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html
 
|Documentation note=User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html
 
|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors
 
|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors
|Version identifier=5.0.3
+
|Version identifier=5.2.0
|Version date=2011/11/02
+
|Version date=2014/08/08
 
|Version status=stable
 
|Version status=stable
|Version download=http://www.ebi.ac.uk/compneur-srv/melting/MELTING5.0.3.tar.gz
+
|Version download=https://sourceforge.net/projects/melting/files/meltingJava/melting5/
 
|Last review by=Andrew Engelbrecht
 
|Last review by=Andrew Engelbrecht
 
|Last review date=2012/06/22
 
|Last review date=2012/06/22
 
|Submitted by=Database conversion
 
|Submitted by=Database conversion
 
|Submitted date=2011-04-01
 
|Submitted date=2011-04-01
 +
|Status=
 +
|Is GNU=Yes
 +
|GNU package identifier=melting
 
|License verified date=2001-01-31
 
|License verified date=2001-01-31
 
}}
 
}}
 
{{Project license
 
{{Project license
 
|License=GPLv2orlater
 
|License=GPLv2orlater
|License verified by=Andrew Engelbrecht
+
|License verified by=Genium
|License verified date=2001-01-31
+
|License verified date=2017/01/29
 +
|License note=https://sourceforge.net/p/melting/code/HEAD/tree/trunk/melting-java/COPYING.txt
 
}}
 
}}
 
{{Person
 
{{Person
Line 28: Line 32:
 
|Role=Maintainer
 
|Role=Maintainer
 
|Email=lenov@pasteur.fr
 
|Email=lenov@pasteur.fr
 +
|Resource URL=
 
}}
 
}}
 
{{Person
 
{{Person
Line 33: Line 38:
 
|Role=Contributor
 
|Role=Contributor
 
|Email=letondal@pasteur.fr
 
|Email=letondal@pasteur.fr
 +
|Resource URL=
 
}}
 
}}
 
{{Person
 
{{Person
Line 38: Line 44:
 
|Role=Contributor
 
|Role=Contributor
 
|Email=njoly@pasteur.fr
 
|Email=njoly@pasteur.fr
 +
|Resource URL=
 
}}
 
}}
 
{{Person
 
{{Person
Line 43: Line 50:
 
|Role=Contributor
 
|Role=Contributor
 
|Email=nirav@biosci.arizona.edu
 
|Email=nirav@biosci.arizona.edu
 +
|Resource URL=
 
}}
 
}}
 
{{Resource
 
{{Resource
Line 48: Line 56:
 
|Resource kind=E-mail
 
|Resource kind=E-mail
 
|Resource URL=mailto:melting@listes.pasteur.fr
 
|Resource URL=mailto:melting@listes.pasteur.fr
 +
}}
 +
{{Resource
 +
|Resource audience=Developer
 +
|Resource kind=Homepage
 +
|Resource URL=https://sourceforge.net/projects/melting/
 +
}}
 +
{{Resource
 +
|Resource audience=User & Developer
 +
|Resource kind=Download
 +
|Resource URL=https://sourceforge.net/projects/melting/files/
 +
}}
 +
{{Resource
 +
|Resource audience=Debian
 +
|Resource kind=Homepage
 +
|Resource URL=https://packages.debian.org/jessie/melting
 
}}
 
}}
 
{{Software category
 
{{Software category
 
|Interface=command-line, web, x-window-system
 
|Interface=command-line, web, x-window-system
 +
|Programming-language=java
 
|Science=chemistry
 
|Science=chemistry
 
|Use=science
 
|Use=science
 
}}
 
}}
 
{{Featured}}
 
{{Featured}}

Latest revision as of 06:49, 29 January 2017

[edit]

GNU MELTING

https://www.ebi.ac.uk/biomodels/tools/melting/
Nearest-neighbor compilation of nucleic acid hybridation

Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.

Documentation

User manual included and available in HTML format from http://www.ebi.ac.uk/compneur-srv/melting/melting5-doc/melting.html

Heckert gnu.small.png This is a GNU package:melting

Download

Download version 5.2.0 (stable)
released on 8 August 2014

VCS Checkout

Categories




Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterGenium29 January 2017



Leaders and contributors

Contact(s)Role
Catherine Letondal Contributor
Nicolas Joly Contributor
Nirav Merchant Contributor
Nicolas Le Novere Maintainer


Resources and communication

Audience Resource type URI
Developer Homepage https://sourceforge.net/projects/melting/
User & Developer Download https://sourceforge.net/projects/melting/files/
Debian Homepage https://packages.debian.org/jessie/melting
Bug Tracking,Developer,Support E-mail mailto:melting@listes.pasteur.fr


Software prerequisites

This entry (in part or in whole) was last reviewed on 22 June 2012.



Entry








































Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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