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Difference between revisions of "Pathomx"

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(Created page with "{{Entry |Name=MetaPath |Short description=Metabolic pathway visualisation and analysis |Full description=MetaPath is a tool for the analysis of metabolic pathway and associate...")
 
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|Name=MetaPath
 
|Name=MetaPath
 
|Short description=Metabolic pathway visualisation and analysis
 
|Short description=Metabolic pathway visualisation and analysis
|Full description=MetaPath is a tool for the analysis of metabolic pathway and associated visualisation
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|Full description=MetaPath is a tool for the analysis of metabolic pathway and associated visualisation of experimental data. Built on the MetaCyc database it provides an interactive map in which multiple pathways can be simultaneously visualised. Multiple annotations from the MetaCyc database are available including synonyms, associated reactions and pathways and database unification links.
of experimental data. Built on the MetaCyc database it provides an interactive map in which multiple pathways can be simultaneously visualised. Multiple annotations from the MetaCyc database are available including synonyms, associated reactions and pathways and database unification links.
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Metabolomics change data can be imported via simple CSV formats for visualisation on
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targeted pathways. Pathways can be mined and removed algorithmically to identify key
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regulated pathways within in a given dataset providing a simper route to metabolic
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function.
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Metabolomics change data can be imported via simple CSV formats for visualisation on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within in a given dataset providing a simper route to metabolic function.
 
|Homepage URL=https://github.com/mfitzp/metapath
 
|Homepage URL=https://github.com/mfitzp/metapath
 
|User level=beginner
 
|User level=beginner
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|Version status=beta
 
|Version status=beta
 
|Version download=https://github.com/mfitzp/metapath
 
|Version download=https://github.com/mfitzp/metapath
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|Last review by=Jgay
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|Last review date=2013/07/19
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|Submitted by=Mfitzp
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|Submitted date=2013/04/09
 
|Status=
 
|Status=
 
|Is GNU=No
 
|Is GNU=No
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=GNU GPL v3
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|License=GPLv3orlater
 
|License copyright=Martin Fitzpatrick
 
|License copyright=Martin Fitzpatrick
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|License verified by=Jgay
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|License verified date=2013/07/19
 
}}
 
}}
 
{{Person
 
{{Person
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|Education=secondary
 
|Education=secondary
 
|Science=biology, chemistry, scientific-visualization
 
|Science=biology, chemistry, scientific-visualization
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|Use=science
 
}}
 
}}
 
{{Software prerequisite
 
{{Software prerequisite

Revision as of 15:32, 19 July 2013

[edit]

MetaPath

http://pathomx.org
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.

The software functions as a hybrid of workflow and script-based approaches to analysis. Using workflows it is possible to construct rapid, reproducible analysis constructs for experimental data. By combining this with custom inline scripting it is possible to perform any analysis imaginable. Workflows can be dynamically re-arranged to test different approaches and saved to track the development of your approach. Saved workflows can also be shared with other users or groups, allowing instant reproduction of results and methods. Tools can export images as publication-ready high resolution images in common formats.


Download

Download version 3.02 (rolling)
released on 9 April 2013

Categories




Licensing

LicenseVerified byVerified onNotes
GNU GPL v3



Leaders and contributors

Contact(s)Role
Martin Fitzpatrick Lead developer


Resources and communication

Audience Resource type URI
Developer VCS Repository Webview https://github.com/pathomx/pathomx


Software prerequisites

Kind Description
Required to use Graphviz



Entry
























Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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