http://directory.fsf.org/wiki?title=Phylographer&feed=atom&action=history 2013-05-25T06:55:53Z Revision history for this page on the wiki MediaWiki 1.20.2 http://directory.fsf.org/wiki?title=Phylographer&diff=4038&oldid=prev 2011-04-12T14:02:03Z

<p>Created page with &quot;{{Entry |Name=Phylographer |Short description=Visualizes evolutionary relationships |Full description=PhyloGrapher helps you visualize and study evolutionary relationships within...&quot;</p> <p><b>New page</b></p><div>{{Entry<br /> |Name=Phylographer<br /> |Short description=Visualizes evolutionary relationships<br /> |Full description=PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness.<br /> |User level=none<br /> |Status=Live<br /> |Component programs=<br /> |Homepage URL=http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html<br /> |VCS checkout command=<br /> |Computer languages=Tcl/tk<br /> |Documentation note=<br /> |Paid support=<br /> |IRC help=<br /> |IRC general=<br /> |IRC development=<br /> |Related projects=GAUL,Open_BEAGLE,Split-Dist,fastDNAml<br /> |Keywords=science,biology,protein,phylographer,genetics,gene,evolution<br /> |Is GNU=n<br /> |Last review by=Janet Casey<br /> |Last review date=2005-07-19<br /> |Submitted by=Database conversion<br /> |Submitted date=2011-04-01<br /> |Version identifier=2003-04-03<br /> |Version date=2003-04-03<br /> |Version status=stable<br /> |Version download=http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz<br /> |License verified date=2002-11-07<br /> |Version comment=2003-04-03 stable released 2003-04-03<br /> }}<br /> {{Person<br /> |Role=Maintainer<br /> |Real name=Alexander Kozik<br /> |Email=akozik@atgc.org<br /> |Resource URL=<br /> }}<br /> {{Resource<br /> |Resource audience=Bug Tracking,Developer,Support<br /> |Resource kind=E-mail<br /> |Resource URL=mailto:akozik@atgc.org<br /> }}<br /> {{Software category<br /> |Interface=x-window-system<br /> |Science=biology<br /> |Use=science<br /> }}<br /> {{Project license<br /> |License=GPLv2orlater<br /> |License verified by=Janet Casey<br /> |License verified date=2002-11-07<br /> }}<br /> {{Software prerequisite<br /> |Prerequisite kind=Weak prerequisite<br /> |Prerequisite description=fasta (ftp://ftp.virginia.edu/pub/fasta)<br /> }}</div>

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