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Phylographer

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Phylographer

http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html
PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness.


Download

Download version 2003-04-03 (stable)
released on 3 April 2003

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Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterJanet Casey7 November 2002



Leaders and contributors

Contact(s)Role
Alexander Kozik Maintainer


Resources and communication

Audience Resource type URI
Bug Tracking,Developer,Support E-mail mailto:akozik@atgc.org


Software prerequisites

Kind Description
Weak prerequisite fasta (ftp://ftp.virginia.edu/pub/fasta)

This entry (in part or in whole) was last reviewed on 19 July 2005.



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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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