Browse wiki
| Computer languages
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Tcl/tk +
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| Full description
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PhyloGrapher helps you visualize and study … PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness. is indicated by color and line thickness.
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| Homepage URL
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http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html +
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| Interface
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x-window-system +
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| Is GNU
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false +
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| Keywords
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science +
, biology +
, protein +
, phylographer +
, genetics +
, gene +
, evolution +
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| Last review by
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Janet Casey +
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| Last review date
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19 July 2005 +
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| License
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GPLv2orlater +
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| License verified by
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Janet Casey +
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| License verified date
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7 November 2002 +
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| Name
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Phylographer +
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| Prerequisite description
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fasta (ftp://ftp.virginia.edu/pub/fasta) +
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| Prerequisite kind
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Weak prerequisite +
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| Real name
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Alexander Kozik +
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| Related projects
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GAUL +
, Open BEAGLE +
, Split-Dist +
, FastDNAml +
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| Resource URL
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mailto:akozik@atgc.org +
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| Resource audience
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Bug Tracking +
, Developer +
, Support +
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| Resource kind
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E-mail +
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| Revisionid
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4,038 +
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| Revisiontimestamp
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12 April 2011 09:02:03 +
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| Revisionuser
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User:WikiSysop +
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| Role
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Maintainer +
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| Science
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biology +
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| Short description
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Visualizes evolutionary relationships +
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| Submitted by
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Database conversion +
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| Submitted date
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1 April 2011 +
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| Use
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science +
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| User level
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none +
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| Version comment
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2003-04-03 stable released 2003-04-03
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| Version date
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3 April 2003 +
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| Version download
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http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz +
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| Version identifier
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2003-04-03 +
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| Version status
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stable +
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| Has queryThis property is a special property in this wiki.
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Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
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| Modification dateThis property is a special property in this wiki.
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5 March 2013 21:31:25 +
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| Page has default formThis property is a special property in this wiki.
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Entry +
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| Has subobjectThis property is a special property in this wiki.
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Phylographer +
, Phylographer +
, Phylographer +
, Phylographer +
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| EmailThis property is a special property in this wiki.
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akozik@atgc.org +
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Permission is granted to copy, distribute and/or modify this document
under the terms of the GNU Free Documentation License, Version 1.3 or
any later version published by the Free Software Foundation; with no
Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A
copy of the license is included in the page “GNU Free
Documentation License”.
The copyright and license notices on this page only apply to the
text on this page. Any software described in this text has its
own copyright notice and license, which can usually be found in
the distribution itself.
