Alien hunter

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Alien_hunter

http://www.sanger.ac.uk/resources/software/alien_hunter.html
Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.





Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

11 April 2014

Notes

License: gpl2




Leaders and contributors

Contact(s)Role
George Vernikos contact


Resources and communication

AudienceResource typeURI
Downloadhttp://www.sanger.ac.uk/Software/analysis/alien_hunter/
Debian (Ref) (R)https://tracker.debian.org/pkg/alien-hunter


Software prerequisites

This entry (in part or in whole) was last reviewed on 7 March 2018.



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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/alien-hunter

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