Amap-align

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Amap-align

https://code.google.com/archive/p/amap-align/
Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

14 November 2013

Notes

License: pd

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

14 November 2013

Notes

License: gpl-2+

GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

On Debian systems, the complete text of the GNU General Public

License can be found in `/usr/share/common-licenses/GPL'.




Leaders and contributors

Resources and communication

AudienceResource typeURI
Downloadhttp://bio.math.berkeley.edu/amap/download This download area as well as the homepage vanished
Debian (Ref)https://tracker.debian.org/pkg/amap-align


Software prerequisites

This entry (in part or in whole) was last reviewed on 6 February 2018.



Entry




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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/amap-align

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