Bio

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Bio

http://www.bioruby.org/
Ruby tools for computational molecular biology

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation.


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Licensing

LicenseVerified byVerified onNotes
OtherDebian20 March 2013
License: GPL-2 or Ruby

GPL-2 or Ruby BioRuby is copyrighted free software by Toshiaki Katayama <k@bioruby.org>. You can redistribute it and/or modify it under either the terms of the GPL version 2 (see the file

GPL), or the conditions below.
OtherDebian20 March 2013
License: LGPL-2.1

This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.

This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA

On Debian systems, the full text of the GNU Lesser General Public License version 2.1 can be found in the file `/usr/share/common-

licenses/LGPL-2.1'.
GPLv2orlaterDebian20 March 2013
License: GPL-2+

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-

licenses/GPL-2'.
OtherDebian20 March 2013
License: not-the-CC-BY-ND-3.0

not-the-CC-BY-ND-3.0 Despite the following statement:

Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms Distributed under the Creative Commons Attribution-NoDerivs License

The above files, as individual records, are not copyrighted. The

statement is for the UniProt as a whole.
OtherDebian20 March 2013
License: GPL-2 or Ruby

GPL-2:

 This program is free software; you can redistribute it and/or
 modify it under the terms of the GNU General Public License as
 published by the Free Software Foundation; either version 2 of
 the License, or (at your option) any later version.
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 General Public License for more details.
 You should have received a copy of the GNU General Public License
 along with this package; if not, write to the Free Software
 Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
 02110-1301 USA
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file `/usr/share/common-
 licenses/GPL-2'.

Ruby:

 BioRuby is copyrighted free software by Toshiaki Katayama
 <k@bioruby.org>. You can redistribute it and/or modify it under
 either the terms of the GPL version 2 (see the file GPL), or the
 conditions below:
 1. You may make and give away verbatim copies of the source form
 of the      software without restriction, provided that you
 duplicate all of the      original copyright notices and
 associated disclaimers.
 2. You may modify your copy of the software in any way, provided
 that      you do at least ONE of the following:
 a) place your modifications in the Public Domain or otherwise
 make them Freely Available, such as by posting said
 modifications to Usenet or an equivalent medium, or by allowing
 the author to include your modifications in the software.
 b) use the modified software only within your corporation or
 organization.
 c) give non-standard binaries non-standard names, with
 instructions on where to get the original software distribution.
 d) make other distribution arrangements with the author.
 3. You may distribute the software in object code or binary form,
 provided that you do at least ONE of the following:
 a) distribute the binaries and library files of the software,
 together with instructions (in the manual page or equivalent)
 on where to get the original distribution.
 b) accompany the distribution with the machine-readable source of
 the software.
 c) give non-standard binaries non-standard names, with
 instructions on where to get the original software distribution.
 d) make other distribution arrangements with the author.
 4. You may modify and include the part of the software into any
 other      software (possibly commercial).  But some files in the
 distribution      are not written by the author, so that they are
 not under these terms.
 For the list of those files and their copying conditions, see the
 file LEGAL.
 5. The scripts and library files supplied as input to or produced
 as       output from the software do not automatically fall under
 the      copyright of the software, but belong to whomever
 generated them,       and may be sold commercially, and may be
 aggregated with this      software.
 6. THIS SOFTWARE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR
 IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE.



Leaders and contributors

Resources and communication

AudienceResource typeURI
Downloadhttp://www.bioruby.org/


Software prerequisites



Entry



Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/ruby-bio

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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.