Flexbar
Flexbar
https://sourceforge.net/projects/flexbar/
flexible barcode and adapter removal for sequencing platforms
Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.
Parameter names changed in Flexbar. Please review scripts. The recent months, default settings were optimised, several bugs were fixed and various improvements were made, e.g. revamped command- line interface, new trimming modes as well as lower time and memory requirements.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
4 July 2014
Notes
License: gpl-3.0+
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
4 July 2014
Notes
License: bsd/3-clause
BSD/3-clause This program makes use of the SeqAn (Sequence Analysis) library. see <http://www.seqan.de/>
For a complete description of the seqan license, please visit the official BSD website
<http://opensource.org/licenses/BSD-3-Clause>
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Johannes T. Roehr | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) | https://tracker.debian.org/pkg/flexbar | |
| Download | https://sourceforge.net/projects/flexbar/files/ |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.