Open Babel
Open babel
http://openbabel.sourceforge.net
Chemical toolbox utilities (cli)
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows one to search, convert, analyze, or store data from molecular modeling, chemistry, solid- state materials, biochemistry, or related areas. Features include:
- Hydrogen addition and deletion * Support for Molecular
Mechanics * Support for SMARTS molecular matching syntax * Automatic feature perception (rings, bonds, hybridization, aromaticity) * Flexible atom typer and perception of multiple bonds from atomic coordinates * Gasteiger-Marsili partial charge calculation
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
This package includes the following utilities: * babel: Convert between various chemical file formats * obenergy: Calculate the energy for a molecule * obminimize: Optimize the geometry, minimize the energy for a molecule * obgrep: Molecular search program using SMARTS pattern * obgen: Generate 3D coordinates for a molecule * obprop: Print standard molecular properties * obfit: Superimpose two molecules based on a pattern * obrotamer: Generate conformer/rotamer coordinates * obconformer: Generate low-energy conformers * obchiral: Print molecular chirality information * obrotate: Rotate dihedral angle of molecules in batch mode * obprobe: Create electrostatic probe grid
Download
http://ftp.debian.org/debian/pool/main/o/openbabel/openbabel_2.3.2+dfsg.orig.tar.gz
Categories
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: gpl-2
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: gpl-2+
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: mit
MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE DANIEL VEILLARD BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Except as contained in this notice, the name of Daniel Veillard shall not be used in advertising or otherwise to promote the sale, use or other dealings in this Software without prior
written authorization from him.License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: lgpl-2+
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: lgpl-2.1+
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: zlib
License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: lgpl-2 / lgpl-2.1 / lgpl-3
LGPL-2 / LGPL-2.1 / LGPL-3 This program is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation version 2 or 3 of the License.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.License
Verified by
Debian: Michael Banck <mbanck@debian.org>
Verified on
20 September 2014
Notes
License: lgpl-2.1
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Geoffrey R. Hutchison | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) (R) | https://tracker.debian.org/pkg/openbabel | |
| Download | http://sourceforge.net/projects/openbabel/files/openbabel/ |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.