Prime-phylo

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Prime-phylo

http://prime.sbc.su.se
bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

17 October 2014

Notes

License: gpl-3

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

17 October 2014

Notes

License: bsd-3-clause

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

17 October 2014

Notes

License: mtl




Leaders and contributors

Contact(s)Role
Erik Sjolund contact


Resources and communication

AudienceResource typeURI
Downloadhttp://prime.sbc.su.se/download/
Debian (Ref)https://tracker.debian.org/pkg/prime-phylo


Software prerequisites

This entry (in part or in whole) was last reviewed on 22 February 2018.



Entry




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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/prime-phylo

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