SRF
Srf
http://srf.sourceforge.net/
specification documents for the SRF format DNA sequence data
SRF (sort for Sequence Read Format) is a generic format capable of storing data generated by any DNA sequencing technology. Hence it has sufficient flexibility to store data from current and future DNA sequencing technologies at minimal cost of implementation. Benefits include a single input file format for all downstream applications and a read lookup index enabling downstream formats to reference reads without duplication of all of the read specific information.
This package contains the version 1.3.2 of the specification.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
12 May 2014
Notes
License: apache-2.0
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
12 May 2014
Notes
License: grl
GRL Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the Genome Research Limited nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY GRL ``AS IS AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
The upstream autor of src/SRF_util.cc confirmed in a private email that the current license the original program where it was taken from, the Staden io-lib, applies instead of the non-free
statement contained in the file itself.
Leaders and contributors
| Contact(s) | Role |
|---|---|
| http://www.bcgsc.ca/mailman/listinfo/ssrformat | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) (R) | https://tracker.debian.org/pkg/srf | |
| Download | http://downloads.sourceforge.net/project/srf/srf/v0.1/srf-v0.1.tar.gz |
Software prerequisites
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