Seg

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Seg

ftp://ftp.ncbi.nih.gov/pub/seg/seg/
tool to mask segments of low compositional complexity in amino acid sequences

ncbi-seg (a.k.a. SEG) is a program for identifying and masking segments of low compositional complexity in amino acid sequences.

ncbi-seg divides sequences into contrasting segments of low- complexity and high-complexity. Low-complexity segments defined by the algorithm represent "simple sequences" or "compositionally-biased regions".

This program is inappropriate for masking nucleotide sequences and, in fact, may strip some nucleotide ambiguity codes from nt. sequences as they are being read.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian: Laszlo Kajan <lkajan@debian.org>

Verified on

13 September 2014

Notes

License: public-domain

public-domain PUBLIC DOMAIN NOTICE National Center for Biotechnology Information

This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the authors' official duties as United States Government employees and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction.

Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose.

Please cite the authors in any work or product based on this material.

Authors: John C. Wootton, Scott Federhen National Center For Biotechnology Information National Library of

Medicine National Institutes of Health




Leaders and contributors

Contact(s)Role
John Wootton contact


Resources and communication

AudienceResource typeURI
Downloadftp://ftp.ncbi.nih.gov/pub/seg/seg/
R (Ref)https://cran.r-project.org/web/packages/seg
Ruby (Ref)https://rubygems.org/gems/seg
Debian (Ref) (R)https://tracker.debian.org/pkg/ncbi-seg


Software prerequisites




Entry








"contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"R (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.


"Ruby (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.


"Debian (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/ncbi-seg

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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.