TopHat

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Tophat

http://ccb.jhu.edu/software/tophat
fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.





Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>

Verified on

26 October 2014

Notes

License: m4-free

M4-free This file is free software; the Free Software Foundation gives unlimited permission to copy and/or distribute it, with or

without modifications, as long as this notice is preserved.

License

Other

Verified by

Debian: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>

Verified on

26 October 2014

Notes

License: autobuild-free

autobuild-free This configure script is free software; the Free Software Foundation gives unlimited permission to copy,

distribute and modify it.

License

Other

Verified by

Debian: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>

Verified on

26 October 2014

Notes

License: artistic

License

Other

Verified by

Debian: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>

Verified on

26 October 2014

Notes

License: gap




Leaders and contributors

Contact(s)Role
Daehwan Kim contact


Resources and communication

AudienceResource typeURI
Downloadhttp://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz
Debian (Ref) (R)https://tracker.debian.org/pkg/tophat
Python (Ref)https://pypi.org/project/TopHat


Software prerequisites




Entry




















"contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"Python (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.


"Debian (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/tophat

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