Jgromacs
Jgromacs
http://nanomed.bioch.ox.ac.uk/jgromacs/
library for molecular dynamics trajectory analysis
JGromacs is a Java library designed to facilitate the development of cross-platform analysis applications for Molecular Dynamics (MD) simulations. The package contains parsers for file formats applied by GROMACS (GROningen MAchine for Chemical Simulations), one of the most widely used MD simulation packages.
JGromacs provides a multilevel object-oriented representation of simulation data to integrate and interconvert sequence, structure and dynamics information. In addititon, a basic analysis toolkit is included in the package. The programmer is also provided with simple tools (e.g. XML-based configuration) to create applications with a user interface resembling the command-line UI of Gromacs applications.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Steffen Moeller <moeller@debian.org>
Verified on
16 May 2012
Notes
License: public-domain
public-domain This software is a cooperative product of The MathWorks and the National Institute of Standards and Technology (NIST) which has been released to the public domain. Neither The MathWorks nor NIST assumes any responsibility whatsoever for its use by other parties, and makes no guarantees, expressed or implied, about its quality, reliability, or any other
characteristic.License
Verified by
Debian: Steffen Moeller <moeller@debian.org>
Verified on
16 May 2012
Notes
License: gpl-3.0+
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://nanomed.bioch.ox.ac.uk/jgromacs/ | |
| Debian (Ref) | https://tracker.debian.org/pkg/jgromacs |
Software prerequisites
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