Difference between revisions of "BioRuby"

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(Debian import)
 
(Added Debian link)
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{{Entry
 
{{Entry
−
|Status=
 
−
|User level=
 
−
|Submitted by=Debian import
 
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|Computer languages=Ruby
 
 
|Name=Bio
 
|Name=Bio
−
|Submitted date=2013-03-20
 
 
|Short description=Ruby tools for computational molecular biology
 
|Short description=Ruby tools for computational molecular biology
−
|VCS checkout command=
 
 
|Full description=BioRuby project aims to implement an integrated environment for
 
|Full description=BioRuby project aims to implement an integrated environment for
 
Bioinformatics with Ruby language. Design philosophy of the
 
Bioinformatics with Ruby language. Design philosophy of the
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(Human Genome Center), Kyoto University (Bioinformatics Center)
 
(Human Genome Center), Kyoto University (Bioinformatics Center)
 
and the Open Bio Foundation.
 
and the Open Bio Foundation.
−
|Component programs=
 
 
|Homepage URL=http://www.bioruby.org/
 
|Homepage URL=http://www.bioruby.org/
 +
|Computer languages=Ruby
 +
|Accepts cryptocurrency donations=No
 +
|Last review by=Bendikker
 +
|Last review date=2018/03/21
 +
|Submitted date=2013-03-20
 
|Is GNU=No
 
|Is GNU=No
−
}}
 
−
{{Import
 
−
|Date=2013-03-20
 
−
|Source=Debian import
 
−
|Source link=http://packages.debian.org/sid/ruby-bio
 
 
}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=Other
 +
|License copyright=© Copyright Toshiaki Katayama <k@bioruby.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© Copyright Toshiaki Katayama <k@bioruby.org>
 
−
 
−
|License=Other
 
 
|License note=License: GPL-2 or Ruby
 
|License note=License: GPL-2 or Ruby
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=Other
 +
|License copyright=© 2000-2006 Minero Aoki
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© 2000-2006 Minero Aoki
 
−
 
−
|License=Other
 
 
|License note=License: LGPL-2.1
 
|License note=License: LGPL-2.1
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=GPLv2orlater
 +
|License copyright=© 2006 Pjotr Prins <p@bioruby.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© 2006 Pjotr Prins <p@bioruby.org>
 
−
 
−
|License=GPLv2orlater
 
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=GPLv2orlater
 +
|License copyright=© 2002-2004 KATAYAMA Toshiaki <k@bioruby.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© 2002-2004 KATAYAMA Toshiaki <k@bioruby.org>
 
−
 
−
|License=GPLv2orlater
 
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
−
|License verified date=2013-03-20
+
|License=GPLv2orlater
−
|License verified by=Debian
 
 
|License copyright=© 2006 Pjotr Prins <p@bioruby.org>
 
|License copyright=© 2006 Pjotr Prins <p@bioruby.org>
 
© 2006 Trevor Wennblom <trevor@corevx.com>
 
© 2006 Trevor Wennblom <trevor@corevx.com>
−
 
+
|License verified by=Debian
−
|License=GPLv2orlater
+
|License verified date=2013-03-20
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=GPLv2orlater
 +
|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org>
 
−
 
−
|License=GPLv2orlater
 
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
−
|License verified date=2013-03-20
+
|License=GPLv2orlater
−
|License verified by=Debian
 
 
|License copyright=© 2008 KATAYAMA Toshiaki <k@bioruby.org>
 
|License copyright=© 2008 KATAYAMA Toshiaki <k@bioruby.org>
 
© 2008 Pjotr Prins <p@bioruby.org>
 
© 2008 Pjotr Prins <p@bioruby.org>
−
 
+
|License verified by=Debian
−
|License=GPLv2orlater
+
|License verified date=2013-03-20
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
−
|License verified date=2013-03-20
+
|License=GPLv2orlater
−
|License verified by=Debian
 
 
|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org>
 
|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org>
 
© 2002 Yoshinori K. Okuji <o@bioruby.org>
 
© 2002 Yoshinori K. Okuji <o@bioruby.org>
−
 
+
|License verified by=Debian
−
|License=GPLv2orlater
+
|License verified date=2013-03-20
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=GPLv2orlater
 +
|License copyright=© 2002 KATAYAMA Toshiaki <k@bioruby.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© 2002 KATAYAMA Toshiaki <k@bioruby.org>
 
−
 
−
|License=GPLv2orlater
 
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
−
|License verified date=2013-03-20
+
|License=GPLv2orlater
−
|License verified by=Debian
 
 
|License copyright=© 2003 KATAYAMA Toshiaki <k@bioruby.org>
 
|License copyright=© 2003 KATAYAMA Toshiaki <k@bioruby.org>
 
© 2003 Mitsuteru C. Nakao <n@bioruby.org>
 
© 2003 Mitsuteru C. Nakao <n@bioruby.org>
 
© 2003 Itoshi NIKAIDO <itoshi@gsc.riken.go.jp>
 
© 2003 Itoshi NIKAIDO <itoshi@gsc.riken.go.jp>
 
© 2003 Takeya KASUKAWA <kasukawa@gsc.riken.go.jp>
 
© 2003 Takeya KASUKAWA <kasukawa@gsc.riken.go.jp>
−
 
+
|License verified by=Debian
−
|License=GPLv2orlater
+
|License verified date=2013-03-20
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
−
|License verified date=2013-03-20
+
|License=Other
−
|License verified by=Debian
 
 
|License copyright=© none
 
|License copyright=© none
 
© These files are marked to be copyrighted by the UniProt Consortium, but this
 
© These files are marked to be copyrighted by the UniProt Consortium, but this
 
© applies to the UniProt database as a whole, not to the individual records.
 
© applies to the UniProt database as a whole, not to the individual records.
−
 
+
|License verified by=Debian
−
|License=Other
+
|License verified date=2013-03-20
 
|License note=License: not-the-CC-BY-ND-3.0
 
|License note=License: not-the-CC-BY-ND-3.0
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=Other
 +
|License copyright=© Copyright 2011 Lucas Nussbaum <lucas@debian.org>
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
−
|License verified by=Debian
 
−
|License copyright=© Copyright 2011 Lucas Nussbaum <lucas@debian.org>
 
−
 
−
|License=Other
 
 
|License note=License: GPL-2 or Ruby
 
|License note=License: GPL-2 or Ruby
  
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   WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
 
   WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
 
   PURPOSE.
 
   PURPOSE.
−
 
 
}}
 
}}
 
{{Resource
 
{{Resource
 +
|Resource audience=Debian (Ref) (R)
 +
|Resource URL=https://tracker.debian.org/pkg/ruby-bio
 +
}}
 +
{{Resource
 +
|Resource kind=Download
 
|Resource URL=http://www.bioruby.org/
 
|Resource URL=http://www.bioruby.org/
−
|Resource kind=Download
+
}}
 +
{{Software category}}
 +
{{Featured}}
 +
{{Import
 +
|Date=2013-03-20
 +
|Source=Debian import
 +
|Source link=http://packages.debian.org/sid/ruby-bio
 
}}
 
}}

Revision as of 04:07, 21 March 2018


[edit]

BioRuby

http://bioruby.org/
Bioinformatics library for Ruby.

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation.



Download

http://bioruby.org/archive/bioruby-2.0.1.tar.gz




Categories





Licensing

License

Verified by

Verified on

Notes

License

Ruby

Verified by

Debian

Verified on

30 March 2020

Notes

GPLv2 or Ruby

License

Ruby

Verified by

Debian

Verified on

30 March 2020

Notes

GPLv2orlater or Ruby

License

LGPLv2.1orlater

Verified by

Debian

Verified on

20 March 2013

License

GPLv2orlater

Verified by

Debian

Verified on

20 March 2013

Notes

GPLv2orlater or Ruby

License

GPLv2orlater

Verified by

Debian

Verified on

20 March 2013

License

BSD 2Clause

Verified by

Debian Mertgor

Verified on

30 June 2015

Notes

BSD-2-Clause https://github.com/bioruby/bioruby/blob/master/COPYING

License

Other

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Contact(s)Role
Toshiaki Katayama Copyright Holder


Resources and communication

AudienceResource typeURI
Debian (Ref) (R)https://tracker.debian.org/pkg/ruby-bio
Mailing Listhttps://lists.open-bio.org/mailman/listinfo/bioruby
Ruby (Ref)https://rubygems.org/gems/bio
Mailing Listhttps://lists.open-bio.org/mailman/listinfo/bioruby-ja
VCS Repository Webviewhttps://github.com/bioruby/bioruby/


Software prerequisites

KindDescription
Source requirementRuby




Entry








































"Debian (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property. 













































Date

2013-03-20




Source

Debian import




Source link

http://packages.debian.org/sid/ruby-bio



[[Category:]]








				
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				copy of the license is included in the page “GNU Free
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				text on this page.  Any software or copyright-licenses or other
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				text itself. 


				

									

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