Difference between revisions of "VelvetOptimiser"
(Debian import) |
(Added Debian link) |
||
Line 6: | Line 6: | ||
-cov_cutoff) for the Velvet de novo sequence assembler. | -cov_cutoff) for the Velvet de novo sequence assembler. | ||
|Homepage URL=http://bioinformatics.net.au/software.velvetoptimiser.shtml | |Homepage URL=http://bioinformatics.net.au/software.velvetoptimiser.shtml | ||
− | | | + | |Is High Priority Project=No |
− | + | |Accepts cryptocurrency donations=No | |
− | |||
− | |||
− | | | ||
− | |||
|Version identifier=2.2.5-2 | |Version identifier=2.2.5-2 | ||
− | |Version download=http://ftp.debian.org/debian/pool/main/v/velvetoptimiser/velvetoptimiser_2.2.5.orig.tar.gz | + | |Version download=http://ftp.debian.org/debian/pool/main/v/velvetoptimiser/velvetoptimiser_2.2.5.orig.tar.gz |
− | | | + | |Last review by=Bendikker |
+ | |Last review date=2018/03/22 | ||
|Submitted date=2015-07-17 | |Submitted date=2015-07-17 | ||
− | + | |Is GNU=No | |
− | |||
− | | | ||
− | |||
− | |||
− | |||
}} | }} | ||
{{Project license | {{Project license | ||
Line 34: | Line 26: | ||
|Role=contact | |Role=contact | ||
|Email=simon.gladman@monash.edu | |Email=simon.gladman@monash.edu | ||
+ | }} | ||
+ | {{Resource | ||
+ | |Resource audience=Debian (Ref) (R) | ||
+ | |Resource URL=https://tracker.debian.org/pkg/velvetoptimiser | ||
}} | }} | ||
{{Resource | {{Resource | ||
|Resource kind=Download | |Resource kind=Download | ||
|Resource URL=http://bioinformatics.net.au/software.velvetoptimiser.shtml | |Resource URL=http://bioinformatics.net.au/software.velvetoptimiser.shtml | ||
+ | }} | ||
+ | {{Software category}} | ||
+ | {{Featured}} | ||
+ | {{Import | ||
+ | |Date=2015-07-17 | ||
+ | |Source=Debian | ||
+ | |Source link=http://packages.debian.org/sid/velvetoptimiser | ||
}} | }} |
Latest revision as of 02:36, 22 March 2018
Velvetoptimiser
http://bioinformatics.net.au/software.velvetoptimiser.shtml
automatically optimise Velvet do novo assembly parameters
VelvetOptimiser is a multi-threaded Perl script for automatically optimising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler.
Download
http://ftp.debian.org/debian/pool/main/v/velvetoptimiser/velvetoptimiser_2.2.5.orig.tar.gz
Categories
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
30 June 2014
Notes
License: gpl-2+
Leaders and contributors
Contact(s) | Role |
---|---|
Simon Gladman | contact |
Resources and communication
Audience | Resource type | URI |
---|---|---|
Debian (Ref) (R) | https://tracker.debian.org/pkg/velvetoptimiser | |
Download | http://bioinformatics.net.au/software.velvetoptimiser.shtml |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.