Difference between revisions of "ARDEN"

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filter alignments based on quality estimation.
 
filter alignments based on quality estimation.
 
|Homepage URL=http://sourceforge.net/projects/arden/
 
|Homepage URL=http://sourceforge.net/projects/arden/
|User level=
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|Accepts cryptocurrency donations=No
|Component programs=
 
|VCS checkout command=
 
|Computer languages=
 
|Status=
 
|Is GNU=No
 
 
|Version identifier=1.0-1
 
|Version identifier=1.0-1
|Version download=http://ftp.debian.org/debian/pool/main/a/arden/arden_1.0.orig.tar.xz  
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|Version download=http://ftp.debian.org/debian/pool/main/a/arden/arden_1.0.orig.tar.xz
|Submitted by=Debian import
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|Last review by=Bendikker
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|Last review date=2018/03/07
 
|Submitted date=2015-07-17
 
|Submitted date=2015-07-17
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|Is GNU=No
{{Import
 
|Source=Debian
 
|Source link=http://packages.debian.org/sid/arden
 
|Source packages=arden 1.0-1
 
|Date=2015-07-17
 
 
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{{Project license
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|Role=contact
 
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|Email=gieses@rki.de
 
|Email=gieses@rki.de
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{{Resource
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|Resource audience=Debian (Ref) (R)
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|Resource URL=https://tracker.debian.org/pkg/arden
 
}}
 
}}
 
{{Resource
 
{{Resource
 
|Resource kind=Download
 
|Resource kind=Download
 
|Resource URL=http://sourceforge.net/projects/arden/files/ARDEN/
 
|Resource URL=http://sourceforge.net/projects/arden/files/ARDEN/
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}}
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{{Software category}}
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{{Featured}}
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{{Import
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|Date=2015-07-17
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|Source=Debian
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|Source link=http://packages.debian.org/sid/arden
 
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Latest revision as of 05:27, 7 March 2018


[edit]

Arden

http://sourceforge.net/projects/arden/
specificity control for read alignments using an artificial reference

ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC- curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.





Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

7 February 2014

Notes

License: bsdlike




Leaders and contributors

Contact(s)Role
Sven H. Giese contact


Resources and communication

AudienceResource typeURI
Downloadhttp://sourceforge.net/projects/arden/files/ARDEN/
Debian (Ref) (R)https://tracker.debian.org/pkg/arden


Software prerequisites




Entry








"contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"Debian (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/arden

[[Category:]]



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