AmpliconNoise
Ampliconnoise
http://code.google.com/p/ampliconnoise/
Programs for the removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high- throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38
Licensing
License
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License
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License: GNU Lesser GPL v3
GNU Lesser GPL v3 This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this library ('COPYING'); if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
On Debian systems, the full text of the GNU LESSER GENERAL PUBLIC LICENSE can be found in the file `/usr/share/common-
licenses/LGPL-3'.License
Verified by
Debian
Verified on
20 March 2013
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License: GPL-3
GPL-3 The packaging is licensed under GPL version3 see
`/usr/share/common-licenses/GPL-3'.
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Tim Booth | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://code.google.com/p/ampliconnoise/ | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/ampliconnoise |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.