Difference between revisions of "Bamtools"

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{{Entry
 
{{Entry
 
|Name=bamtools
 
|Name=bamtools
|Short description=tools for handling BAM files. (genome alignment)
+
|Short description=tools for handling genome alignment (BAM) files.
|Full description=BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
+
|Full description=BamTools provides both a programmer's API and an end-user's toolkit for handling genome alignment files in the BAM and SAM format.
 
A BAM file (.bam) is the binary version of a SAM file.  A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data.
 
A BAM file (.bam) is the binary version of a SAM file.  A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data.
 
|Homepage URL=https://github.com/pezmaster31/bamtools/wiki
 
|Homepage URL=https://github.com/pezmaster31/bamtools/wiki
 +
|VCS checkout command=git clone https://github.com/pezmaster31/bamtools
 
|Version identifier=2.3.0
 
|Version identifier=2.3.0
 
|Version date=2013/07/24
 
|Version date=2013/07/24
 
|Version status=stable
 
|Version status=stable
 
|Version download=https://github.com/pezmaster31/bamtools
 
|Version download=https://github.com/pezmaster31/bamtools
|Submitted by=Beth Lynn Eicher
+
|Submitted by=bethlynn
|Submitted date=2014/06/13
+
|Submitted date=2014/06/20
 
|Status=
 
|Status=
 
|Is GNU=No
 
|Is GNU=No
 
}}
 
}}
 
{{Project license
 
{{Project license
|License note=MIT License ???
+
|License=Expat
 +
|License note=Actual license language:
 
https://github.com/pezmaster31/bamtools/blob/master/LICENSE
 
https://github.com/pezmaster31/bamtools/blob/master/LICENSE
 
}}
 
}}
 +
{{Person
 +
|Real name=Derek Barnett
 +
|Role=primary contact
 +
|Email=derekwbarnett@gmail.com
 +
|Resource URL=
 +
}}
 +
{{Person
 +
|Resource URL=
 +
}}
 +
{{Resource
 +
|Resource audience=bamtools users
 +
|Resource kind=Mailing List
 +
|Resource URL=https://github.com/pezmaster31/bamtools/wiki/Mailing-lists
 +
}}
 +
{{Resource}}
 
{{Software category
 
{{Software category
 
|Biology=genetics
 
|Biology=genetics

Revision as of 14:56, 20 June 2014

[edit]

bamtools

https://github.com/pezmaster31/bamtools/wiki
tools for handling genome alignment (BAM) files.

BamTools provides both a programmer's API and an end-user's toolkit for handling genome alignment files in the BAM and SAM format. A BAM file (.bam) is the binary version of a SAM file. A SAM file (.sam) is a tab-delimited text file that contains sequence alignment data.



Download

https://github.com/pezmaster31/bamtools

version 2.3.0 (stable)
released on 24 July 2013




VCS Checkout

Categories





Licensing

License

Verified by

Verified on

Notes

License

Expat

Verified by

Jgay

Verified on

20 June 2014




Leaders and contributors

Contact(s)Role
Derek Barnett primary contact


Resources and communication

AudienceResource typeURI
bamtools usersMailing Listhttps://github.com/pezmaster31/bamtools/wiki/Mailing-lists
Debian (Ref)https://tracker.debian.org/pkg/bamtools


Software prerequisites

KindDescription
Required to buildcmake
{{{Prerequisite description}}}

This entry (in part or in whole) was last reviewed on 7 February 2018.



Entry













"primary contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.





"bamtools users" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








"{{{Prerequisite kind}}}" is not in the list (Required to use, Required to build, Source requirement, Weak prerequisite) of allowed values for the "Prerequisite kind" property.






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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.