Difference between revisions of "Bcbio-nextgen"

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(Created page with "{{Entry |Name=bcbio-nextgen |Short description= genome variant calling and RNA-seq analysis |Full description=A python toolkit providing best-practice pipelines for fully auto...")
 
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{{Entry
 
{{Entry
 
|Name=bcbio-nextgen
 
|Name=bcbio-nextgen
|Short description= genome variant calling and RNA-seq analysis
+
|Short description=genome variant calling and RNA-seq analysis
 
|Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.
 
|Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.
 
|Homepage URL=https://bcbio-nextgen.readthedocs.org/en/latest/
 
|Homepage URL=https://bcbio-nextgen.readthedocs.org/en/latest/
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|Version date=2014/06/20
 
|Version date=2014/06/20
 
|Version status=stable
 
|Version status=stable
|Version download=wget https://raw.github.com/chapmanb/bcbio-nextgen/master/scripts/bcbio_nextgen_install.py
+
|Version download=https://raw.github.com/chapmanb/bcbio-nextgen/master/scripts/bcbio_nextgen_install.py
 
|Version comment=Sorry. This project does not do version numbering. Instead, they release early and often to github. Activity is weekly if not more.
 
|Version comment=Sorry. This project does not do version numbering. Instead, they release early and often to github. Activity is weekly if not more.
 
|Submitted by=Bethlynn
 
|Submitted by=Bethlynn

Revision as of 17:23, 11 July 2014

[edit]

bcbio

https://bcbio-nextgen.readthedocs.org/en/latest/
Genome variant calling and RNA-seq analysis.

A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.

Extension or Plugin

This package can be used as an extension, plugin, or add-on to:





Licensing

License

Verified by

Verified on

Notes

License

Expat

Verified by

Bendikker

Verified on

29 March 2020




Leaders and contributors

Contact(s)Role
Brad Chapman primary contact


Resources and communication

AudienceResource typeURI
geomes and RNA-seq tools user groupMailing Listhttps://groups.google.com/forum/#!forum/biovalidation
Python (Ref)https://pypi.org/project/bcbio-nextgen
Debian (Ref) (R)https://tracker.debian.org/pkg/bcbio
VCS Repository Webviewhttps://github.com/chapmanb/bcbio-nextgen


Software prerequisites

This entry (in part or in whole) was last reviewed on 29 March 2020.



Entry

















"primary contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"geomes and RNA-seq tools user group" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.










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