Difference between revisions of "Bcbio-nextgen"
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{{Entry | {{Entry | ||
|Name=bcbio-nextgen | |Name=bcbio-nextgen | ||
| − | |Short description= genome variant calling and RNA-seq analysis | + | |Short description=genome variant calling and RNA-seq analysis |
|Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files. | |Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files. | ||
|Homepage URL=https://bcbio-nextgen.readthedocs.org/en/latest/ | |Homepage URL=https://bcbio-nextgen.readthedocs.org/en/latest/ | ||
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|Version date=2014/06/20 | |Version date=2014/06/20 | ||
|Version status=stable | |Version status=stable | ||
| − | |Version download= | + | |Version download=https://raw.github.com/chapmanb/bcbio-nextgen/master/scripts/bcbio_nextgen_install.py |
|Version comment=Sorry. This project does not do version numbering. Instead, they release early and often to github. Activity is weekly if not more. | |Version comment=Sorry. This project does not do version numbering. Instead, they release early and often to github. Activity is weekly if not more. | ||
|Submitted by=Bethlynn | |Submitted by=Bethlynn | ||
Revision as of 18:23, 11 July 2014
bcbio
https://bcbio-nextgen.readthedocs.org/en/latest/
Genome variant calling and RNA-seq analysis.
A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Brad Chapman | primary contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) (R) | https://tracker.debian.org/pkg/bcbio | |
| VCS Repository Webview | https://github.com/chapmanb/bcbio-nextgen | |
| Python (Ref) | https://pypi.org/project/bcbio-nextgen | |
| geomes and RNA-seq tools user group | Mailing List | https://groups.google.com/forum/#!forum/biovalidation |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.