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Genome variant calling and RNA-seq analysis.

A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.



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29 March 2020

Leaders and contributors

Brad Chapman primary contact

Resources and communication

AudienceResource typeURI
Debian (Ref) (R)https://tracker.debian.org/pkg/bcbio
VCS Repository Webviewhttps://github.com/chapmanb/bcbio-nextgen
Python (Ref)https://pypi.org/project/bcbio-nextgen
geomes and RNA-seq tools user groupMailing Listhttps://groups.google.com/forum/#!forum/biovalidation

Software prerequisites


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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

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