Difference between revisions of "Bedtools"

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|VCS checkout command=https://github.com/arq5x/bedtools2.git
 
|VCS checkout command=https://github.com/arq5x/bedtools2.git
 
|Documentation note=http://quinlanlab.org/tutorials/bedtools/bedtools.html
 
|Documentation note=http://quinlanlab.org/tutorials/bedtools/bedtools.html
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|Related projects=pybedtools
 
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|Version download=https://github.com/arq5x/bedtools2/archive/v2.29.2.tar.gz
 
|Version download=https://github.com/arq5x/bedtools2/archive/v2.29.2.tar.gz
 
|Last review by=Bendikker
 
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|Last review date=2020/03/29
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|Submitted date=2013-03-20
 
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 
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|License copyright=© © 2009, 2010, 2011 - Aaron Quinlan
 
|License copyright=© © 2009, 2010, 2011 - Aaron Quinlan
 
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|License copyright=© © 2009-2010 Derek Barnett, Erik Garrison, Gabor Marth, Michael Stromberg
 
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|License copyright=© © 2001  Deepak Bandyopadhyay, Lutz Kettner
 
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Latest revision as of 14:45, 31 March 2020


[edit]

Bedtools

https://bedtools.readthedocs.io/en/latest/
Suite of utilities for comparing genomic features.

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distribued in the filo package.



Download

https://github.com/arq5x/bedtools2/archive/v2.29.2.tar.gz




Categories





Licensing

License

Verified by

Verified on

Notes

License

GPLv2

Verified by

Debian

Verified on

20 March 2013

License

BSD 2Clause

Verified by

Debian

Verified on

20 March 2013

License

Expat

Verified by

Debian

Verified on

20 March 2013

License

LGPLv2.1orlater

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Mailing Listhttps://groups.google.com/forum/?fromgroups#!forum/bedtools-discuss
VCS Repository Webviewhttps://github.com/arq5x/bedtools2
Debian (Ref)https://tracker.debian.org/pkg/bedtools
Generalhttps://www.biostars.org/t/bedtools/


Software prerequisites




Entry






















"Debian (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.











Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bedtools

[[Category:]]


Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.

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