Difference between revisions of "Bedtools"

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|VCS checkout command=https://github.com/arq5x/bedtools2.git
 
|VCS checkout command=https://github.com/arq5x/bedtools2.git
 
|Documentation note=http://quinlanlab.org/tutorials/bedtools/bedtools.html
 
|Documentation note=http://quinlanlab.org/tutorials/bedtools/bedtools.html
 
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If you have corrections to this entry or questions about it, please contact: mailto:directory-discuss@gnu.org
 
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|Decommissioned or Obsolete=No
 
|Decommissioned or Obsolete=No
 
|Related projects=pybedtools
 
|Related projects=pybedtools
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|Last review date=2020/03/30
 
|Last review date=2020/03/30
 
|Submitted date=2013-03-20
 
|Submitted date=2013-03-20
|Paid support=https://www.fsf.org/resources/service/
 
 
|Accepts cryptocurrency donations=No
 
|Accepts cryptocurrency donations=No
 
|Test entry=No
 
|Test entry=No

Latest revision as of 13:45, 31 March 2020


[edit]

Bedtools

https://bedtools.readthedocs.io/en/latest/
Suite of utilities for comparing genomic features.

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distribued in the filo package.





Licensing

License

Verified by

Verified on

Notes

License

GPLv2

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Debian

Verified on

20 March 2013

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Debian

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20 March 2013

License

Expat

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Debian

Verified on

20 March 2013

Verified by

Debian

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20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Mailing Listhttps://groups.google.com/forum/?fromgroups#!forum/bedtools-discuss
VCS Repository Webviewhttps://github.com/arq5x/bedtools2
Debian (Ref)https://tracker.debian.org/pkg/bedtools
Generalhttps://www.biostars.org/t/bedtools/


Software prerequisites




Entry






















"Debian (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.











Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bedtools

[[Category:]]



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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.