Difference between revisions of "Bedtools"
(Updated version, homepage, download links) |
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|Homepage URL=https://github.com/arq5x/bedtools2 | |Homepage URL=https://github.com/arq5x/bedtools2 | ||
|Computer languages=C++ | |Computer languages=C++ | ||
| + | |Accepts cryptocurrency donations=No | ||
|Version identifier=2.26.0 | |Version identifier=2.26.0 | ||
|Version date=2016/07/06 | |Version date=2016/07/06 | ||
|Version status=stable | |Version status=stable | ||
|Version download=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz | |Version download=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz | ||
| − | |Last review by= | + | |Last review by=Bendikker |
| − | |Last review date= | + | |Last review date=2018/02/07 |
| − | |||
|Submitted date=2013-03-20 | |Submitted date=2013-03-20 | ||
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|Is GNU=No | |Is GNU=No | ||
}} | }} | ||
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OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | ||
POSSIBILITY OF SUCH DAMAGE. | POSSIBILITY OF SUCH DAMAGE. | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource audience=Debian | ||
| + | |Resource URL=http://tracker.debian.org/pkg/bedtools | ||
}} | }} | ||
{{Resource | {{Resource | ||
Revision as of 03:53, 7 February 2018
Bedtools
https://bedtools.readthedocs.io/en/latest/
Suite of utilities for comparing genomic features.
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.
The groupBy utility is distribued in the filo package.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Mailing List | https://groups.google.com/forum/?fromgroups#!forum/bedtools-discuss | |
| VCS Repository Webview | https://github.com/arq5x/bedtools2 | |
| Debian (Ref) | https://tracker.debian.org/pkg/bedtools | |
| General | https://www.biostars.org/t/bedtools/ |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.