Difference between revisions of "BioRuby"
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{{Entry | {{Entry | ||
− | |Name= | + | |Name=BioRuby |
− | |Short description=Ruby | + | |Short description=Bioinformatics library for Ruby. |
|Full description=BioRuby project aims to implement an integrated environment for | |Full description=BioRuby project aims to implement an integrated environment for | ||
Bioinformatics with Ruby language. Design philosophy of the | Bioinformatics with Ruby language. Design philosophy of the | ||
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(Human Genome Center), Kyoto University (Bioinformatics Center) | (Human Genome Center), Kyoto University (Bioinformatics Center) | ||
and the Open Bio Foundation. | and the Open Bio Foundation. | ||
− | |Homepage URL=http:// | + | |Homepage URL=http://bioruby.org/ |
|Is High Priority Project=No | |Is High Priority Project=No | ||
− | | | + | |VCS checkout command=git clone https://github.com/bioruby/bioruby.git |
+ | |Documentation note=http://bioruby.org/rdoc/ | ||
+ | |Decommissioned or Obsolete=No | ||
+ | |IRC general=irc://irc.freenode.org#bioruby | ||
+ | |Related projects=bioperl | ||
+ | |Version identifier=2.0.1 | ||
+ | |Version date=2019/09/06 | ||
+ | |Version status=stable | ||
+ | |Version download=http://bioruby.org/archive/bioruby-2.0.1.tar.gz | ||
+ | |Last review by=Mertgor | ||
+ | |Last review date=2020/12/24 | ||
+ | |Submitted by=Mertgor | ||
+ | |Submitted date=2013/03/20 | ||
+ | |User level=intermediate | ||
|Accepts cryptocurrency donations=No | |Accepts cryptocurrency donations=No | ||
− | | | + | |Test entry=No |
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}} | }} | ||
{{Project license | {{Project license | ||
− | |License= | + | |License=BSD 2Clause |
+ | |License copyright=© Copyright Toshiaki Katayama <k@bioruby.org> | ||
+ | https://github.com/bioruby/bioruby/blob/master/COPYING | ||
+ | |License verified by=Debian | ||
+ | Mertgor | ||
+ | |License verified date=2015/06/30 | ||
+ | |License note=BSD-2-Clause | ||
+ | https://github.com/bioruby/bioruby/blob/master/COPYING | ||
+ | }} | ||
+ | {{Project license | ||
+ | |License=Ruby | ||
|License copyright=© Copyright Toshiaki Katayama <k@bioruby.org> | |License copyright=© Copyright Toshiaki Katayama <k@bioruby.org> | ||
|License verified by=Debian | |License verified by=Debian | ||
− | |License verified date= | + | |License verified date=2020-03-30 |
− | |License note= | + | |License note=GPLv2 or Ruby |
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}} | }} | ||
{{Project license | {{Project license | ||
− | |License= | + | |License=LGPLv2.1orlater |
|License copyright=© 2000-2006 Minero Aoki | |License copyright=© 2000-2006 Minero Aoki | ||
+ | /usr/share/common- | ||
+ | licenses/LGPL-2.1 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
|License=GPLv2orlater | |License=GPLv2orlater | ||
|License copyright=© 2006 Pjotr Prins <p@bioruby.org> | |License copyright=© 2006 Pjotr Prins <p@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
|License=GPLv2orlater | |License=GPLv2orlater | ||
|License copyright=© 2002-2004 KATAYAMA Toshiaki <k@bioruby.org> | |License copyright=© 2002-2004 KATAYAMA Toshiaki <k@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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{{Project license | {{Project license | ||
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|License copyright=© 2006 Pjotr Prins <p@bioruby.org> | |License copyright=© 2006 Pjotr Prins <p@bioruby.org> | ||
© 2006 Trevor Wennblom <trevor@corevx.com> | © 2006 Trevor Wennblom <trevor@corevx.com> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
|License=GPLv2orlater | |License=GPLv2orlater | ||
|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org> | |License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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{{Project license | {{Project license | ||
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|License copyright=© 2008 KATAYAMA Toshiaki <k@bioruby.org> | |License copyright=© 2008 KATAYAMA Toshiaki <k@bioruby.org> | ||
© 2008 Pjotr Prins <p@bioruby.org> | © 2008 Pjotr Prins <p@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
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|License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org> | |License copyright=© 2001 KATAYAMA Toshiaki <k@bioruby.org> | ||
© 2002 Yoshinori K. Okuji <o@bioruby.org> | © 2002 Yoshinori K. Okuji <o@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
|License=GPLv2orlater | |License=GPLv2orlater | ||
|License copyright=© 2002 KATAYAMA Toshiaki <k@bioruby.org> | |License copyright=© 2002 KATAYAMA Toshiaki <k@bioruby.org> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
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© 2003 Itoshi NIKAIDO <itoshi@gsc.riken.go.jp> | © 2003 Itoshi NIKAIDO <itoshi@gsc.riken.go.jp> | ||
© 2003 Takeya KASUKAWA <kasukawa@gsc.riken.go.jp> | © 2003 Takeya KASUKAWA <kasukawa@gsc.riken.go.jp> | ||
+ | /usr/share/common-licenses/GPL-2 | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
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© These files are marked to be copyrighted by the UniProt Consortium, but this | © These files are marked to be copyrighted by the UniProt Consortium, but this | ||
© applies to the UniProt database as a whole, not to the individual records. | © applies to the UniProt database as a whole, not to the individual records. | ||
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not-the-CC-BY-ND-3.0 Despite the following statement: | not-the-CC-BY-ND-3.0 Despite the following statement: | ||
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The above files, as individual records, are not copyrighted. The | The above files, as individual records, are not copyrighted. The | ||
statement is for the UniProt as a whole. | statement is for the UniProt as a whole. | ||
+ | |License verified by=Debian | ||
+ | |License verified date=2013-03-20 | ||
}} | }} | ||
{{Project license | {{Project license | ||
− | |License= | + | |License=GPLv2orlater |
|License copyright=© Copyright 2011 Lucas Nussbaum <lucas@debian.org> | |License copyright=© Copyright 2011 Lucas Nussbaum <lucas@debian.org> | ||
|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
− | |License note= | + | |License note=GPLv2orlater or Ruby |
− | + | }} | |
− | + | {{Project license | |
− | + | |License=Ruby | |
− | + | |License copyright=© Copyright 2011 Lucas Nussbaum <lucas@debian.org> | |
− | + | |License verified by=Debian | |
− | + | |License verified date=2020-03-30 | |
− | + | |License note=GPLv2orlater or Ruby | |
− | + | }} | |
− | + | {{Software category | |
− | + | |Biology=health-and-medicine | |
− | + | |Programming-language=ruby | |
− | + | |Runs-on=GNU/Linux | |
− | + | |Use=fighting-coronavirus | |
− | + | }} | |
− | + | {{Software prerequisite | |
− | + | |Prerequisite kind=Source requirement | |
− | + | |Prerequisite description=Ruby | |
− | + | }} | |
− | + | {{Person | |
− | + | |Real name=Toshiaki Katayama | |
− | + | |Role=Copyright Holder | |
− | + | |Email=k@bioruby.org | |
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}} | }} | ||
{{Resource | {{Resource | ||
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}} | }} | ||
{{Resource | {{Resource | ||
− | |Resource kind= | + | |Resource kind=VCS Repository Webview |
− | |Resource URL= | + | |Resource URL=https://github.com/bioruby/bioruby/ |
+ | }} | ||
+ | {{Resource | ||
+ | |Resource kind=Mailing List | ||
+ | |Resource URL=https://lists.open-bio.org/mailman/listinfo/bioruby | ||
+ | }} | ||
+ | {{Resource | ||
+ | |Resource kind=Mailing List | ||
+ | |Resource URL=https://lists.open-bio.org/mailman/listinfo/bioruby-ja | ||
}} | }} | ||
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{{Featured}} | {{Featured}} | ||
{{Import | {{Import |
Latest revision as of 15:42, 24 December 2020
BioRuby
http://bioruby.org/
Bioinformatics library for Ruby.
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian Mertgor
Verified on
30 June 2015
Notes
BSD-2-Clause https://github.com/bioruby/bioruby/blob/master/COPYING
Leaders and contributors
Contact(s) | Role |
---|---|
Toshiaki Katayama | Copyright Holder |
Resources and communication
Audience | Resource type | URI |
---|---|---|
Debian (Ref) (R) | https://tracker.debian.org/pkg/ruby-bio | |
Mailing List | https://lists.open-bio.org/mailman/listinfo/bioruby | |
Ruby (Ref) | https://rubygems.org/gems/bio | |
Mailing List | https://lists.open-bio.org/mailman/listinfo/bioruby-ja | |
VCS Repository Webview | https://github.com/bioruby/bioruby/ |
Software prerequisites
Kind | Description |
---|---|
Source requirement | Ruby |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.