Difference between revisions of "Bioperl"

From Free Software Directory
Jump to: navigation, search
(standard links version maillists)
 
(2 intermediate revisions by the same user not shown)
Line 17: Line 17:
 
|VCS checkout command=https://github.com/bioperl/bioperl-live.git
 
|VCS checkout command=https://github.com/bioperl/bioperl-live.git
 
|Documentation note=https://bioperl.org/howtos/index.html
 
|Documentation note=https://bioperl.org/howtos/index.html
 
----
 
----
 
 
If you have corrections to this entry or questions about it, please contact: mailto:directory-discuss@gnu.org
 
----
 
 
|Decommissioned or Obsolete=No
 
|Decommissioned or Obsolete=No
 
|Microblog=https://twitter.com/bioperl
 
|Microblog=https://twitter.com/bioperl
Line 31: Line 25:
 
|Version download=https://github.com/bioperl/bioperl-live/archive/BioPerl-v1.7.7.tar.gz
 
|Version download=https://github.com/bioperl/bioperl-live/archive/BioPerl-v1.7.7.tar.gz
 
|Last review by=Bendikker
 
|Last review by=Bendikker
|Last review date=2018/02/07
+
|Last review date=2020/03/30
 
|Submitted date=2013-03-20
 
|Submitted date=2013-03-20
|Paid support=https://www.fsf.org/resources/service/
 
 
|Accepts cryptocurrency donations=No
 
|Accepts cryptocurrency donations=No
 
|Test entry=No
 
|Test entry=No
Line 39: Line 32:
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=Other
+
|License=GPLv1orlater
 
|License copyright=© The Bioperl developers.
 
|License copyright=© The Bioperl developers.
 
© PRIMARY AUTHORS AND MAJOR CONTRIBUTORS TO BIOPERL
 
© PRIMARY AUTHORS AND MAJOR CONTRIBUTORS TO BIOPERL
Line 159: Line 152:
 
|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: Perl
+
|License note="Warning" only GPLv1orlater (from the Perl license) is a free licene.
 
 
This program is free software; you can redistribute it and/or
 
modify it under the terms of either:
 
 
 
a) the GNU General Public License as published by the Free
 
Software    Foundation; either version 1, or (at your option) any
 
later    version, or
 
 
 
b) the "Artistic License" which comes with Perl.
 
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=Other
+
|License=GPLv1orlater
 
|License copyright=© © 1997-8 Graham Barr <gbarr@ti.com>
 
|License copyright=© © 1997-8 Graham Barr <gbarr@ti.com>
 
|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: Perl
+
|License note="Warning" only GPLv1orlater (from the Perl license) is a free licene.
 
 
This program is free software; you can redistribute it and/or
 
modify it under the terms of either:
 
 
 
a) the GNU General Public License as published by the Free
 
Software    Foundation; either version 1, or (at your option) any
 
later    version, or
 
 
 
b) the "Artistic License" which comes with Perl.
 
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=Other
+
|License=GPLv1orlater
 
|License copyright=© © 2002 Mark Fowler <mark@twoshortplanks.com>
 
|License copyright=© © 2002 Mark Fowler <mark@twoshortplanks.com>
 
|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: Perl
+
|License note="Warning" only GPLv1orlater (from the Perl license) is a free licene.
 
 
This program is free software; you can redistribute it and/or
 
modify it under the terms of either:
 
 
 
a) the GNU General Public License as published by the Free
 
Software    Foundation; either version 1, or (at your option) any
 
later    version, or
 
 
 
b) the "Artistic License" which comes with Perl.
 
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=Other
+
|License=LGPLv2.1orlater
 
|License copyright=© © 2001 Charles Tilford <tilfordc@bms.com>
 
|License copyright=© © 2001 Charles Tilford <tilfordc@bms.com>
 
|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: LGPL-2.1+
 
 
LGPL-2.1+ This library is free software; you can redistribute it
 
and/or modify it under the terms of the GNU Lesser General Public
 
License as published by the Free Software Foundation; either
 
version 2.1 of the License, or (at your option) any later
 
version.
 
 
This library is distributed in the hope that it will be useful,
 
but WITHOUT ANY WARRANTY; without even the implied warranty of
 
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 
Lesser General Public License for more details.
 
 
You should have received a copy of the GNU Lesser General Public
 
License along with this library; if not, write to the Free
 
Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
 
MA  02110-1301  USA
 
 
}}
 
}}
 
{{Project license
 
{{Project license
 
|License=PublicDomain
 
|License=PublicDomain
 
|License copyright=© Public Domain work
 
|License copyright=© Public Domain work
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License note=License: public-domain
 
 
 
public-domain This software/database is ``United States
 
public-domain This software/database is ``United States
 
Government Work'' under the terms of the United States Copyright
 
Government Work'' under the terms of the United States Copyright
Line 247: Line 192:
 
Government disclaims all warranties as to performance,
 
Government disclaims all warranties as to performance,
 
merchantability or fitness for any particular purpose.
 
merchantability or fitness for any particular purpose.
 +
|License verified by=Debian
 +
|License verified date=2013-03-20
 
}}
 
}}
 
{{Project license
 
{{Project license
Line 257: Line 204:
 
© © 2008 David Paleino <d.paleino@gmail.com>
 
© © 2008 David Paleino <d.paleino@gmail.com>
 
© © 2008 Nelson A. de Oliveira <naoliv@debian.org>
 
© © 2008 Nelson A. de Oliveira <naoliv@debian.org>
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License note=License: unclear
 
  
 
unclear The license under which is placed the work of the earlier
 
unclear The license under which is placed the work of the earlier
 
contributors is unknown. The work of Charles Plessy can be
 
contributors is unknown. The work of Charles Plessy can be
 
treated as if it were public domain.
 
treated as if it were public domain.
 +
|License verified by=Debian
 +
|License verified date=2013-03-20
 
}}
 
}}
 
{{Resource
 
{{Resource
Line 270: Line 216:
 
}}
 
}}
 
{{Resource
 
{{Resource
|Resource audience=Perl (Ref)
+
|Resource audience=Perl (Ref) (R)
 
|Resource URL=https://metacpan.org/release/BioPerl
 
|Resource URL=https://metacpan.org/release/BioPerl
 
}}
 
}}

Latest revision as of 14:42, 31 March 2020

[edit]

BioPerl

https://bioperl.org/
Tools for computational molecular biology.

The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl.

The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian.

The suggested package enhances the manual pages.

Documentation

https://bioperl.org/howtos/index.html

"IRC general" IRC general channel
irc://irc.freenode.net/#bioperl





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013

Notes

"Warning" only GPLv1orlater (from the Perl license) is a free licene.

Verified by

Debian

Verified on

20 March 2013

Verified by

Debian

Verified on

20 March 2013

License

Other

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Debian (Ref)https://tracker.debian.org/pkg/bioperl
VCS Repository Webviewhttps://github.com/bioperl/bioperl-live
Mailing Listhttps://lists.open-bio.org/mailman/listinfo/bioperl-l
Mailing Listhttps://lists.open-bio.org/mailman/listinfo/bioperl-guts-l
Mailing Listhttps://lists.open-bio.org/mailman/listinfo/bioperl-announce-l
Perl (Ref) (R)https://metacpan.org/release/BioPerl


Software prerequisites

This entry (in part or in whole) was last reviewed on 30 March 2020.



Entry






Property "Submitted by" (as page type) with input value "{{{Submitted by}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.























"Debian (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.


"Perl (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.













Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bioperl

[[Category:]]



Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.