Difference between revisions of "Blossoc"
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|Short description=A block-association mapping tool. | |Short description=A block-association mapping tool. | ||
|Full description=Blossoc is a linkage disequilibrium association mapping tool that attempts to build (perfect) genealogies for each site in the input, score these according to non-random clustering of affected individuals, and judge high-scoring areas as likely candidates for containing disease affecting variation. Building the local genealogy trees is based on a number of heuristics that are not guaranteed to build true trees, but have the advantage over more sophisticated methods of being extremely fast. Blossoc can therefore handle much larger data sets than more sophisticated tools, but at the cost of sacrificing some accuracy. | |Full description=Blossoc is a linkage disequilibrium association mapping tool that attempts to build (perfect) genealogies for each site in the input, score these according to non-random clustering of affected individuals, and judge high-scoring areas as likely candidates for containing disease affecting variation. Building the local genealogy trees is based on a number of heuristics that are not guaranteed to build true trees, but have the advantage over more sophisticated methods of being extremely fast. Blossoc can therefore handle much larger data sets than more sophisticated tools, but at the cost of sacrificing some accuracy. | ||
| + | |Homepage URL=http://www.daimi.au.dk/~mailund/Blossoc | ||
|User level=none | |User level=none | ||
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|Computer languages=C++ | |Computer languages=C++ | ||
|Documentation note=User Manual at http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.0.pdf | |Documentation note=User Manual at http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.0.pdf | ||
| − | | | + | |Version identifier=1.4.0 |
| − | | | + | |Version date=2005/10/13 |
| − | | | + | |Version status=stable |
| − | | | + | |Version download=http://daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz |
| − | | | + | |Version comment=1.4.0 released on 2005-10-13 |
| − | + | |Last review by=Alejandroindependiente | |
| − | + | |Last review date=2016/12/28 | |
| − | |Last review by= | ||
| − | |Last review date= | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| − | | | + | |Status= |
| − | | | + | |Is GNU=No |
| − | | | + | |License verified date=2006-10-13 |
| − | | | + | }} |
| + | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License verified by=Ted Teah | ||
|License verified date=2006-10-13 | |License verified date=2006-10-13 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Thomas Mailund | ||
|Role=Maintainer | |Role=Maintainer | ||
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|Email=thomas@mailund.dk | |Email=thomas@mailund.dk | ||
|Resource URL= | |Resource URL= | ||
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}} | }} | ||
{{Software category | {{Software category | ||
| − | |Interface=command-line,x-window-system | + | |Interface=command-line, x-window-system |
|Science=biology | |Science=biology | ||
|Use=science | |Use=science | ||
}} | }} | ||
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Latest revision as of 19:32, 27 December 2016
Blossoc
http://www.daimi.au.dk/~mailund/Blossoc
A block-association mapping tool.
Blossoc is a linkage disequilibrium association mapping tool that attempts to build (perfect) genealogies for each site in the input, score these according to non-random clustering of affected individuals, and judge high-scoring areas as likely candidates for containing disease affecting variation. Building the local genealogy trees is based on a number of heuristics that are not guaranteed to build true trees, but have the advantage over more sophisticated methods of being extremely fast. Blossoc can therefore handle much larger data sets than more sophisticated tools, but at the cost of sacrificing some accuracy.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Thomas Mailund | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking | VCS Repository Webview | http://www.daimi.au.dk/~mailund/bugtrack/login_page.php |
| Developer,Help,Support | mailto:thomas@mailund.dk |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.